CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03966
KRH22283
KRH27047
KRH57236

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64813.1	KRH03966	AT3G48550.1	21798944
AT5G64813.1	KRH57236	AT3G48550.1	21798944
AT5G64813.1	KRH22283	AT3G58630.1	21798944
AT5G64813.1	KRH27047	AT3G58630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59455	Soybean	cytosol	97.6	96.73
VIT_07s0031g01700.t01	Wine grape	cytosol	80.48	79.76
AT5G64813.1	Thale cress	cytosol	77.48	75.44
Solyc04g051700.2.1	Tomato	cytosol	75.38	75.38
PGSC0003DMT400080131	Potato	cytosol	75.08	74.85
Bra037797.1-P	Field mustard	cytosol	75.68	73.68
CDY18693	Canola	cytosol	75.68	73.68
CDX81260	Canola	cytosol	75.38	73.39
GSMUA_Achr10P...	Banana	cytosol	72.37	72.16
VIT_18s0001g02170.t01	Wine grape	cytosol	72.37	71.94
GSMUA_Achr2P16850_001	Banana	cytosol	72.07	71.22
AT5G09910.1	Thale cress	cytosol	71.17	71.17
CDY14513	Canola	plasma membrane	76.28	68.83
Bra024329.1-P	Field mustard	cytosol	76.28	68.1
GSMUA_Achr6P00810_001	Banana	cytosol	69.07	68.05
CDY08848	Canola	cytosol	75.38	67.47
Os10t0135200-01	Rice	cytosol	69.07	67.06
KRH04620	Soybean	extracellular	21.32	66.36
EER91775	Sorghum	cytosol	67.27	66.08
TraesCS1D01G166300.1	Wheat	cytosol	65.47	64.69
TraesCS1B01G205000.1	Wheat	cytosol	64.86	64.09
HORVU1Hr1G045310.7	Barley	cytosol	64.26	63.5
Zm00001d047945_P002	Maize	cytosol, plastid	62.16	61.06
EER95186	Sorghum	cytosol, plastid	61.86	60.77
Os03t0242200-01	Rice	cytosol	60.96	60.06
TraesCS4A01G071800.1	Wheat	cytosol, plastid	60.06	59.0
TraesCS4B01G227700.1	Wheat	cytosol	59.76	57.68
TraesCS4D01G228600.2	Wheat	cytosol	59.76	57.68
HORVU4Hr1G063900.7	Barley	cytosol	60.06	54.35
TraesCS1A01G172300.2	Wheat	cytosol	61.26	54.26
Zm00001d014330_P014	Maize	plastid	61.86	47.69

Protein Annotations

EntrezGene:100784826	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02004851	EnsemblPlantsGene:GLYMA_08G142300	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:I1KTA5	EnsemblPlants:KRH43322	ProteinID:KRH43322	ProteinID:KRH43322.1	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	ScanProsite:PS00675	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF492	SMART:SM00175
SUPFAM:SSF52540	InterPro:Sigma_54_int_dom_ATP-bd_1	InterPro:Small_GTPase	UniParc:UPI0002337F5B	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:-:10835541..10840807

Molecular Weight (calculated)

36666.2 Da

IEP (calculated)

9.003

GRAVY (calculated)

-0.464

Length

333 amino acids

Sequence
(BLAST)

001: MFWRDREREN KELNGGVLCG QVRVLVVGDS GVGKTSLVNL IVKGSPIARP PQTIGCSVDV KHITYGNSGS SSSSLKGDSE RDFFVELWDV SGHERYKDCR
101: SLFYSQINGV IFVHDLSQRR TKTSLQKWAA EIAATGTFSA PLGSGGPGGL PVPYIVIGNK ADIAAKDGPR GSSGNLVDVA RQWVEKQGLL PSSEELPLTE
201: SFPSNGGLIA AAKEARHDKE AVVKFFRKLI RRRYFSDEIQ IPSPAWSIPS VQRQAQRIDE NFTEDDQSYN TSDPYKYNML PPLPAQRNLT PPPTLYPQQP
301: VSVSENYSFP RFSLSGSSEI STVARTKRSD INV

Best Arabidopsis Sequence Match ( AT5G64813.1 )
(BLAST)

001: MKFWRERERE NKEQILAPLC GQVRVLVVGD SGVGKTSLVH LINKGSSIVR PPQTIGCTVG VKHITYGSPA SSSSSIQGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGPGG LPVPYIVVGN KADIAAKEGT KGSSGNLVDA ARHWVEKQGL LPSSSEDLPL
201: FESFPGNGGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE LPAASPWSIS PVPTSSSQRL DEITSDDDQF YKRTSFHGDP YKYNNTIPPL PAQRNLTPPP
301: TLYPQQPVST PDNYTIPRYS LSSVQETTNN GSARSKRMDI NV

Arabidopsis Description

LIP1Small GTPase LIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.