CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95402
KRH13873
KRH38083
KRH43419
KRH67080
KRH71831

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48550.1	KRG95402	AT5G06710.1	21798944
AT3G48550.1	KRH13873	AT5G06710.1	21798944
AT3G48550.1	KRH38083	AT5G06710.1	21798944
AT3G48550.1	KRH43419	AT5G06710.1	21798944
AT3G48550.1	KRH67080	AT5G06710.1	21798944
AT3G48550.1	KRH71831	AT5G06710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03966	Soybean	cytosol	94.77	94.16
VIT_17s0000g01360.t01	Wine grape	cytosol, mitochondrion, nucleus	62.09	56.21
AT3G48550.1	Thale cress	nucleus	57.52	55.7
CDY70544	Canola	nucleus	56.86	55.41
Bra018049.1-P	Field mustard	nucleus	57.52	54.66
PGSC0003DMT400046599	Potato	nucleus	59.48	53.85
CDY60454	Canola	nucleus	57.52	53.66
Bra029904.1-P	Field mustard	nucleus	57.52	53.66
Solyc03g112920.1.1	Tomato	nucleus	59.48	51.7
CDX68463	Canola	cytosol, mitochondrion, nucleus	54.9	51.22
GSMUA_Achr6P20920_001	Banana	cytosol, mitochondrion, nucleus	49.02	50.34
GSMUA_Achr6P06410_001	Banana	nucleus	45.1	46.62
Os04t0386300-01	Rice	cytosol, mitochondrion, plastid	39.22	44.44
Zm00001d016564_P001	Maize	cytosol	44.44	40.24
TraesCS2A01G282700.1	Wheat	cytosol	44.44	37.78
EES05120	Sorghum	cytosol	43.79	37.43
TraesCS2B01G300000.1	Wheat	cytosol	43.79	37.22
Zm00001d003978_P001	Maize	cytosol	43.14	35.29
TraesCS2D01G281400.1	Wheat	cytosol	40.52	34.07
EES12026	Sorghum	cytosol, plastid, vacuole	43.79	33.84

Protein Annotations

EMBL:ACUP02002822	EnsemblPlants:KRH57236	EnsemblPlantsGene:GLYMA_05G048500	EntrezGene:100775486	GO:GO:0008150	GO:GO:0009605
GO:GO:0009606	GO:GO:0009628	GO:GO:0009630	ncoils:Coil	PANTHER:PTHR34946	PANTHER:PTHR34946:SF2
ProteinID:KRH57236	ProteinID:KRH57236.1	ProteinID:KRH57237.1	SEG:seg	UniParc:UPI000233940A	UniProt:A0A0R0K041
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:4320587..4322150

Molecular Weight (calculated)

17194.5 Da

IEP (calculated)

6.012

GRAVY (calculated)

-0.571

Length

153 amino acids

Sequence
(BLAST)

001: MEDEVNRELD LLPSSRSNSS LLRLCSAVSS SSTTDCGGGG GGAPSLDLQL SISVRPPAAV LMCDGVEALK WQAAEQIRLA AMEKAYAERV RELTRREMEM
101: AQTEFARARQ MWERAREEVE RAERIKERAT RQQVDSTCME ITCHSCRQRF RPA

Best Arabidopsis Sequence Match ( AT3G48550.1 )
(BLAST)

001: MAEQQDHHKE LQLLPSPPST ESPVRKHRPT VITTDHHNNH HRSSSMIHHD LDLKLSISLS SISTAEELPN GGVEALKWQA AEQIRLAAIE KAYAERVREL
101: TRREMEMAQS EFARARVMWQ KAREEVERAE RLKERSMTKI DTACLEITCH SCRQRFRP

Arabidopsis Description

At3g48550 [Source:UniProtKB/TrEMBL;Acc:Q9SMP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.