CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01102
KRH04366
KRH12426
KRH28314
KRH40151
KRH48783
KRH58171
KRH66562
KRH77172

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06710.1	KRH01102	AT3G60390.1	21798944
AT5G06710.1	KRH40151	AT3G60390.1	21798944
AT5G06710.1	KRH48783	AT3G60390.1	21798944
AT5G06710.1	KRH66562	AT3G60390.1	21798944
AT5G06710.1	KRH12426	AT4G26100.1	21798944
AT5G06710.1	KRH04366	AT4G37790.1	21798944
AT5G06710.1	KRH28314	AT4G37790.1	21798944
AT5G06710.1	KRH58171	AT4G37790.1	21798944
AT5G06710.1	KRH77172	AT4G37790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0447000-00	Rice	nucleus	28.42	92.22
KRH67080	Soybean	nucleus	85.96	87.15
KRH38083	Soybean	nucleus	65.41	58.41
KRH71831	Soybean	plastid	65.75	58.36
GSMUA_Achr3P07740_001	Banana	nucleus	38.36	57.73
VIT_08s0007g06670.t01	Wine grape	nucleus	64.38	56.8
KRH40151	Soybean	nucleus	36.64	46.72
GSMUA_Achr7P02380_001	Banana	nucleus	45.55	46.18
KRH43419	Soybean	nucleus	59.25	45.89
GSMUA_Achr9P15710_001	Banana	nucleus	48.97	45.83
AT5G06710.1	Thale cress	nucleus	52.74	45.83
CDX81016	Canola	nucleus	40.75	45.77
KRH13873	Soybean	nucleus	59.25	45.05
Zm00001d020670_P001	Maize	nucleus	51.37	45.05
KRH77331	Soybean	nucleus	41.1	44.78
GSMUA_Achr8P22800_001	Banana	nucleus	40.07	44.15
KRH50371	Soybean	nucleus	32.19	44.13
CDX70076	Canola	nucleus	51.37	44.12
Bra009219.1-P	Field mustard	nucleus	51.37	44.12
Bra005907.1-P	Field mustard	nucleus	48.63	44.1
CDX98948	Canola	nucleus	50.68	43.66
CDY55775	Canola	nucleus	47.95	43.48
KRG89300	Soybean	nucleus	32.19	42.92
TraesCS5D01G235300.1	Wheat	nucleus	49.66	42.77
KRH57467	Soybean	nucleus	43.49	42.62
KRH12370	Soybean	nucleus	32.88	42.48
KRH04179	Soybean	nucleus	43.49	42.47
TraesCS5B01G231300.1	Wheat	nucleus	51.03	41.97
KRH28155	Soybean	nucleus	40.75	41.75
TraesCS5A01G232700.1	Wheat	nucleus	50.0	41.6
KRH28314	Soybean	nucleus	40.07	41.34
Zm00001d005875_P001	Maize	nucleus	45.89	41.23
EER98990	Sorghum	nucleus	52.05	41.19
KRH37372	Soybean	nucleus	33.22	40.93
KRH77172	Soybean	nucleus	39.04	40.28
KRH19131	Soybean	nucleus	29.11	39.91
KRH02731	Soybean	nucleus	28.42	39.71
KRH01102	Soybean	nucleus	38.36	38.62
KRH66562	Soybean	nucleus	40.75	38.39
KRH48783	Soybean	nucleus	41.1	37.85
KXG25294	Sorghum	nucleus	49.32	37.7
CDX78884	Canola	nucleus	31.85	36.9
KRH04366	Soybean	nucleus	38.7	36.22
KRH58171	Soybean	extracellular, nucleus	37.67	36.07
HORVU5Hr1G067010.2	Barley	nucleus	47.95	35.62
Zm00001d031745_P001	Maize	plastid	50.68	33.41
KRH61469	Soybean	nucleus	31.85	32.07
KRH15480	Soybean	nucleus	32.88	31.48
KRG88660	Soybean	nucleus	32.53	30.74

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100810885	MapMan:15.5.3.1	EMBL:ACUP02012106	ncoils:Coil	EnsemblPlantsGene:GLYMA_19G149000
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:K7MYG7	ProteinID:KRG95401.1	EnsemblPlants:KRG95402	ProteinID:KRG95402
ProteinID:KRG95402.1	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	ScanProsite:PS00027	PFscan:PS50071
PANTHER:PTHR24326	PANTHER:PTHR24326:SF105	SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000233EE82
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:40937814..40939821

Molecular Weight (calculated)

32320.3 Da

IEP (calculated)

8.200

GRAVY (calculated)

-0.512

Length

292 amino acids

Sequence
(BLAST)

001: MELALSLGDT PKPFSLPAKN DSVSFKIALG DDKRVSSDPP VQLDLLPSTP VLPSSRLRIP WLSDALGMER VTSEIPVRAV DDTDDGAALS SPNSAVSSFQ
101: MDFCFRNSRK SCEGASDEDD ENGSTRKKLR LSKQQSVFLE ESFKEHTTLN PKQKLALAKQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEY LKRCCESLTE
201: ENRRLQKELQ ELRALKTCQP FFMQLPATTL TMCPSCERVA TNTTTTGAAA AAATTNNYNN VASAPMATNN NSVSQISAVL SVDRQARNIA LT

Best Arabidopsis Sequence Match ( AT5G06710.1 )
(BLAST)

001: MELALSLGDN TKKQFSFMEK NSKINNPSVS STSTSEKDLG FCMALDVAFG GHRSLSSSSS PSVEDEKKKP APRAKKSDEF RVSSSVDPPL QLQLHFPNWL
101: PENSKGRQGG RMPLGAATVV EEEEEEEEAV PSMSVSPPDS VTSSFQLDFG IKSYGYERRS NKRDIDDEVE RSASRASNED NDDENGSTRK KLRLSKDQSA
201: FLEDSFKEHS TLNPKQKIAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCES LTEENRRLQK EVKELRTLKT STPFYMQLPA TTLTMCPSCE
301: RVATSAAQPS TSAAHNLCLS TSSLIPVKPR PAKQVS

Arabidopsis Description

HAT14Homeobox-leucine zipper protein HAT14 [Source:UniProtKB/Swiss-Prot;Acc:P46665]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.