CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

nucleus 5
plastid 2
extracellular 3
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	extracellular
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01102
KRH04179
KRH28155
KRH40151
KRH48783
KRH52586
KRH57467
KRH61926
KRH66562
KRH77331

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37790.1	KRH52586	AT1G22920.1	21798944
AT4G37790.1	KRH61926	AT1G22920.1	21798944
AT4G37790.1	KRH01102	AT3G60390.1	21798944
AT4G37790.1	KRH40151	AT3G60390.1	21798944
AT4G37790.1	KRH48783	AT3G60390.1	21798944
AT4G37790.1	KRH66562	AT3G60390.1	21798944
AT4G37790.1	KRH04179	AT4G16780.1	21798944
AT4G37790.1	KRH28155	AT4G16780.1	21798944
AT4G37790.1	KRH57467	AT4G16780.1	21798944
AT4G37790.1	KRH77331	AT4G16780.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04366	Soybean	nucleus	91.8	89.74
KRH77172	Soybean	nucleus	64.92	69.96
KRH28314	Soybean	nucleus	64.26	69.26
VIT_00s0732g00010.t01	Wine grape	nucleus	59.67	64.31
PGSC0003DMT400055199	Potato	nucleus	48.52	55.64
Solyc02g091930.2.1	Tomato	nucleus	48.85	55.6
AT2G22800.1	Thale cress	nucleus	48.52	54.01
AT4G37790.1	Thale cress	nucleus	49.18	53.96
CDY64220	Canola	nucleus	42.62	53.94
Bra017853.1-P	Field mustard	nucleus	49.18	53.38
Bra030200.1-P	Field mustard	nucleus	48.2	52.31
Bra010612.1-P	Field mustard	nucleus	45.9	51.85
CDY67919	Canola	nucleus	47.87	51.77
Bra011786.1-P	Field mustard	nucleus	47.87	51.77
Solyc02g063520.2.1	Tomato	nucleus	42.62	51.59
PGSC0003DMT400026968	Potato	nucleus	42.95	51.57
CDY60301	Canola	nucleus	45.57	51.48
CDX69330	Canola	nucleus	47.54	51.42
KRH50371	Soybean	nucleus	32.46	46.48
KRG89300	Soybean	nucleus	32.13	44.75
KRH40151	Soybean	nucleus	33.44	44.54
KRH12370	Soybean	nucleus	32.46	43.81
KRH19131	Soybean	nucleus	30.16	43.19
KRH77331	Soybean	nucleus	37.7	42.91
KRH02731	Soybean	nucleus	28.85	42.11
KRH37372	Soybean	nucleus	32.46	41.77
KRH28155	Soybean	nucleus	38.69	41.4
KRH04179	Soybean	nucleus	39.34	40.13
KRH57467	Soybean	nucleus	39.02	39.93
KRH15480	Soybean	nucleus	39.02	39.02
KRH61469	Soybean	nucleus	37.05	38.97
KRH01102	Soybean	nucleus	36.72	38.62
KRH67080	Soybean	nucleus	36.39	38.54
KRH71831	Soybean	plastid	40.98	37.99
KRH38083	Soybean	nucleus	40.66	37.92
KRG95402	Soybean	nucleus, plastid	36.07	37.67
KRG88660	Soybean	nucleus	38.03	37.54
KRH66562	Soybean	nucleus	37.05	36.45
KRH48783	Soybean	nucleus	37.7	36.28
KRH43419	Soybean	nucleus	40.66	32.89
KRH13873	Soybean	nucleus	40.66	32.29

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EMBL:ACUP02003216	ncoils:Coil	EnsemblPlantsGene:GLYMA_05G109500	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom
UniProt:I1K2H5	InterPro:IPR001356	EnsemblPlants:KRH58171	ProteinID:KRH58171	ProteinID:KRH58171.1	InterPro:Leu_zip_homeo
PFAM:PF00046	PFAM:PF02183	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF327
SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	SignalP:SignalP-noTM	UniParc:UPI00023C4A7B	SEG:seg

Description

hypothetical protein

Coordinates

chr5:+:29089826..29091542

Molecular Weight (calculated)

33664.0 Da

IEP (calculated)

8.495

GRAVY (calculated)

-0.606

Length

305 amino acids

Sequence
(BLAST)

001: MLAANSGLQL ILGLALTATT TTTPSSPPSI SNKLDHVDHH HHLITLRPTT KSSYNSSEAE PSLTLGLSRE SYLKVPKSII GHNNNKVSSC DDPLDLSTQT
101: NSPHHSAVSS FSSGRVKRER DLSCEEVVDA KEIDQRDLSC EGIIRATEEE EDGAATRKKL RLTKEQSALL EESFKQHSTL NPKQKQALSK QLNLRPRQVE
201: VWFQNRRART KLKQTEVDCE FLKKCCETLT DENRRLQKEL QELKALKLAQ PLYMPMPAAT LAMCPSCERL GGSAVNGAGG SPKTSFSMAP KPHFFNPFAN
301: PSAAC

Best Arabidopsis Sequence Match ( AT4G37790.1 )
(BLAST)

001: MGLDDSCNTG LVLGLGLSPT PNNYNHAIKK SSSTVDHRFI RLDPSLTLSL SGESYKIKTG AGAGDQICRQ TSSHSGISSF SSGRVKRERE ISGGDGEEEA
101: EETTERVVCS RVSDDHDDEE GVSARKKLRL TKQQSALLED NFKLHSTLNP KQKQALARQL NLRPRQVEVW FQNRRARTKL KQTEVDCEFL KKCCETLTDE
201: NRRLQKELQD LKALKLSQPF YMHMPAATLT MCPSCERLGG GGVGGDTTAV DEETAKGAFS IVTKPRFYNP FTNPSAAC

Arabidopsis Description

HAT22Homeobox-leucine zipper protein HAT22 [Source:UniProtKB/Swiss-Prot;Acc:P46604]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.