CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01102
KRH04179
KRH28155
KRH40151
KRH48783
KRH52586
KRH57467
KRH61926
KRH66562
KRH77331

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37790.1	KRH52586	AT1G22920.1	21798944
AT4G37790.1	KRH61926	AT1G22920.1	21798944
AT4G37790.1	KRH01102	AT3G60390.1	21798944
AT4G37790.1	KRH40151	AT3G60390.1	21798944
AT4G37790.1	KRH48783	AT3G60390.1	21798944
AT4G37790.1	KRH66562	AT3G60390.1	21798944
AT4G37790.1	KRH04179	AT4G16780.1	21798944
AT4G37790.1	KRH28155	AT4G16780.1	21798944
AT4G37790.1	KRH57467	AT4G16780.1	21798944
AT4G37790.1	KRH77331	AT4G16780.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28314	Soybean	nucleus	92.23	92.23
VIT_00s0732g00010.t01	Wine grape	nucleus	68.9	68.9
KRH04366	Soybean	nucleus	74.56	67.63
KRH58171	Soybean	extracellular, nucleus	69.96	64.92
PGSC0003DMT400055199	Potato	nucleus	56.18	59.77
Solyc02g091930.2.1	Tomato	nucleus	56.18	59.33
Solyc02g063520.2.1	Tomato	nucleus	50.88	57.14
PGSC0003DMT400026968	Potato	nucleus	50.88	56.69
AT4G37790.1	Thale cress	nucleus	55.48	56.47
CDY64220	Canola	nucleus	48.06	56.43
AT2G22800.1	Thale cress	nucleus	54.42	56.2
Bra017853.1-P	Field mustard	nucleus	54.77	55.16
CDX69330	Canola	nucleus	54.77	54.96
Bra011786.1-P	Field mustard	nucleus	54.42	54.61
CDY67919	Canola	nucleus	54.42	54.61
Bra030200.1-P	Field mustard	nucleus	54.06	54.45
Bra010612.1-P	Field mustard	nucleus	50.88	53.33
CDY60301	Canola	nucleus	50.53	52.96
KRH40151	Soybean	nucleus	38.52	47.6
KRH19131	Soybean	nucleus	34.98	46.48
KRH02731	Soybean	nucleus	33.92	45.93
KRH50371	Soybean	nucleus	32.86	43.66
KRH12370	Soybean	nucleus	34.28	42.92
KRH77331	Soybean	nucleus	40.28	42.54
KRG89300	Soybean	nucleus	32.51	42.01
KRH01102	Soybean	nucleus	42.4	41.38
KRH37372	Soybean	nucleus	34.63	41.35
KRH67080	Soybean	nucleus	41.34	40.62
KRH04179	Soybean	nucleus	42.76	40.47
KRH57467	Soybean	nucleus	42.4	40.27
KRH61469	Soybean	nucleus	40.99	40.0
KRH15480	Soybean	nucleus	42.76	39.67
KRH28155	Soybean	nucleus	39.93	39.65
KRG95402	Soybean	nucleus, plastid	40.28	39.04
KRG88660	Soybean	nucleus	42.4	38.84
KRH38083	Soybean	nucleus	43.82	37.92
KRH66562	Soybean	nucleus	41.34	37.74
KRH71831	Soybean	plastid	43.82	37.69
KRH48783	Soybean	nucleus	41.7	37.22
KRH43419	Soybean	nucleus	45.23	33.95
KRH13873	Soybean	nucleus	45.58	33.59

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100784129	MapMan:15.5.3.1	EMBL:ACUP02000659	ncoils:Coil	EnsemblPlantsGene:GLYMA_01G196600
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	UniProt:I1J9H4	InterPro:IPR001356	EnsemblPlants:KRH77172	ProteinID:KRH77172	ProteinID:KRH77172.1
InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF327	SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI00023371E1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:53086437..53088339

Molecular Weight (calculated)

31864.9 Da

IEP (calculated)

8.324

GRAVY (calculated)

-0.762

Length

283 amino acids

Sequence
(BLAST)

001: MGLDQDANSS GLHLVLGLSL TATVKETTQS TKPDDDHHLC VIKPTPTKPY PPNEPSLTLG LSGESYHVTK QVLRNNVYCE DPLELSRQTS PHSVVSSFST
101: GRVVKRERDL SCEDIEVEAE ERVSSRVSDE DEDGTNARKK LRLTKEQSAL LEESFKQHST LNPKQKQALA RRLNLRPRQV EVWFQNRRAR TKLKQTEVDC
201: EFLKKCCETL KDENRRLKKE LQELKALKLA QPLYMPMPAA TLTMCPSCDR LGGVNDNGSN KSPFSMAPKP HFYNPFANPS AAC

Best Arabidopsis Sequence Match ( AT4G37790.1 )
(BLAST)

001: MGLDDSCNTG LVLGLGLSPT PNNYNHAIKK SSSTVDHRFI RLDPSLTLSL SGESYKIKTG AGAGDQICRQ TSSHSGISSF SSGRVKRERE ISGGDGEEEA
101: EETTERVVCS RVSDDHDDEE GVSARKKLRL TKQQSALLED NFKLHSTLNP KQKQALARQL NLRPRQVEVW FQNRRARTKL KQTEVDCEFL KKCCETLTDE
201: NRRLQKELQD LKALKLSQPF YMHMPAATLT MCPSCERLGG GGVGGDTTAV DEETAKGAFS IVTKPRFYNP FTNPSAAC

Arabidopsis Description

HAT22Homeobox-leucine zipper protein HAT22 [Source:UniProtKB/Swiss-Prot;Acc:P46604]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.