Factsheet for Solyc02g063520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g090460.2.1
Solyc06g060830.2.1
Solyc06g073150.2.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37790.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT4G37790.1	Solyc11g017300.1.1	AT1G22920.1	21798944
AT4G37790.1	Solyc01g090460.2.1	AT3G60390.1	21798944
AT4G37790.1	Solyc06g060830.2.1	AT4G16780.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026968	Potato	nucleus	92.46	91.73
Solyc02g091930.2.1	Tomato	nucleus	63.49	59.7
VIT_00s0732g00010.t01	Wine grape	nucleus	59.52	53.0
KRH28314	Soybean	nucleus	57.54	51.24
CDY64220	Canola	nucleus	48.81	51.04
KRH77172	Soybean	nucleus	57.14	50.88
AT2G22800.1	Thale cress	nucleus	55.16	50.73
AT4G37790.1	Thale cress	nucleus	55.95	50.72
CDX69330	Canola	nucleus	56.35	50.35
CDY67919	Canola	nucleus	56.35	50.35
Bra011786.1-P	Field mustard	nucleus	56.35	50.35
Bra017853.1-P	Field mustard	nucleus	54.76	49.11
Bra010612.1-P	Field mustard	nucleus	52.38	48.89
CDY60301	Canola	nucleus	51.98	48.52
Bra030200.1-P	Field mustard	nucleus	53.17	47.69
KRH04366	Soybean	nucleus	53.17	42.95
KRH58171	Soybean	extracellular, nucleus	51.59	42.62
Solyc08g078300.2.1	Tomato	nucleus	44.05	39.64
Solyc08g007270.2.1	Tomato	nucleus	42.86	39.27
Solyc04g077220.2.1	Tomato	nucleus	40.87	39.02
Solyc07g054380.1.1	Tomato	nucleus	30.95	37.68
Solyc05g008050.1.1	Tomato	nucleus	30.95	37.32
Solyc01g090460.2.1	Tomato	nucleus	41.67	36.71
Solyc06g060830.2.1	Tomato	nucleus	42.86	36.24
Solyc10g080540.1.1	Tomato	nucleus	46.43	33.05
Solyc01g073910.2.1	Tomato	nucleus	47.22	32.6

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:K4B6N7
InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF252	SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc02g063520.2	EnsemblPlants:Solyc02g063520.2.1
UniParc:UPI000276882C	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:35616626..35618152

Molecular Weight (calculated)

28080.1 Da

IEP (calculated)

8.340

GRAVY (calculated)

-0.687

Length

252 amino acids

Sequence
(BLAST)

001: MESIYDSAGL DLGLGYSSTV NQTSRKDGQV AAVKSDLGFE PSLNLSLSSG DHQMVDLKTE NKDQLSVASS YSNGSVKRER DIGSEVTEVE RVISCRVSHD
101: EDYYEDDDAS NGKKKLRLTK VQSALLEESF KQQSTLNLKQ KQNLARKLNV RPRQVEVWFQ NRRARTKLKQ TEVDCEFLKK YCETLTDENK KLYKELQELK
201: ALKVGQPLYM KLPAAATLTV CPSCERVGAG AAQNSAKPPH LYGSFTNPSA AC

Best Arabidopsis Sequence Match ( AT4G37790.1 )
(BLAST)

001: MGLDDSCNTG LVLGLGLSPT PNNYNHAIKK SSSTVDHRFI RLDPSLTLSL SGESYKIKTG AGAGDQICRQ TSSHSGISSF SSGRVKRERE ISGGDGEEEA
101: EETTERVVCS RVSDDHDDEE GVSARKKLRL TKQQSALLED NFKLHSTLNP KQKQALARQL NLRPRQVEVW FQNRRARTKL KQTEVDCEFL KKCCETLTDE
201: NRRLQKELQD LKALKLSQPF YMHMPAATLT MCPSCERLGG GGVGGDTTAV DEETAKGAFS IVTKPRFYNP FTNPSAAC

Arabidopsis Description

HAT22Homeobox-leucine zipper protein HAT22 [Source:UniProtKB/Swiss-Prot;Acc:P46604]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.