Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400012615 | Potato | nucleus | 93.56 | 92.86 |
| Solyc02g091930.2.1 | Tomato | nucleus | 45.08 | 44.4 |
| Solyc07g054380.1.1 | Tomato | nucleus | 32.58 | 41.55 |
| Solyc02g063520.2.1 | Tomato | nucleus | 39.02 | 40.87 |
| Solyc08g007270.2.1 | Tomato | nucleus | 38.26 | 36.73 |
| Solyc08g078300.2.1 | Tomato | nucleus | 38.64 | 36.43 |
| Solyc05g008050.1.1 | Tomato | nucleus | 28.79 | 36.36 |
| Solyc06g060830.2.1 | Tomato | nucleus | 40.53 | 35.91 |
| Solyc01g090460.2.1 | Tomato | nucleus | 36.36 | 33.57 |
| Solyc01g073910.2.1 | Tomato | nucleus | 42.05 | 30.41 |
| Solyc10g080540.1.1 | Tomato | nucleus | 37.88 | 28.25 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | UniProt:K4BUF9 |
| InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 |
| PANTHER:PTHR24326:SF486 | SMART:SM00340 | SMART:SM00389 | SUPFAM:SSF46689 | EnsemblPlantsGene:Solyc04g077220.2 | EnsemblPlants:Solyc04g077220.2.1 |
| UniParc:UPI0002766261 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4:-:62148603..62150431
Molecular Weight (calculated)
30138.2 Da
IEP (calculated)
8.583
GRAVY (calculated)
-0.962
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MMCNTRLSLS LGLSTPPPHQ HNNKGKLSSN DDDNQELTLC LSTSSEFTNN YDNNNRINPQ LLGGVNSSVS SFSNTSSVKR ERDHASSFDE EVENLETKKV
101: LIISPKGLVD HNDDDDYGTR KKLRLTKEQS DVLEDSFKEH TTLNSKQKRD LARRLSLRPR QVEVWFQNRR ARTKLKQTEV DCEILRKCYE DLKDENRRLN
201: KEIQDLKSLK KSQPFRVQLS AATLSMCPSC ERTYGGAATD NSTKISFSIG DQKPHFYGIP SQIH
101: LIISPKGLVD HNDDDDYGTR KKLRLTKEQS DVLEDSFKEH TTLNSKQKRD LARRLSLRPR QVEVWFQNRR ARTKLKQTEV DCEILRKCYE DLKDENRRLN
201: KEIQDLKSLK KSQPFRVQLS AATLSMCPSC ERTYGGAATD NSTKISFSIG DQKPHFYGIP SQIH
001: MGLDDSCNTG LVLGLGLSPT PNNYNHAIKK SSSTVDHRFI RLDPSLTLSL SGESYKIKTG AGAGDQICRQ TSSHSGISSF SSGRVKRERE ISGGDGEEEA
101: EETTERVVCS RVSDDHDDEE GVSARKKLRL TKQQSALLED NFKLHSTLNP KQKQALARQL NLRPRQVEVW FQNRRARTKL KQTEVDCEFL KKCCETLTDE
201: NRRLQKELQD LKALKLSQPF YMHMPAATLT MCPSCERLGG GGVGGDTTAV DEETAKGAFS IVTKPRFYNP FTNPSAAC
101: EETTERVVCS RVSDDHDDEE GVSARKKLRL TKQQSALLED NFKLHSTLNP KQKQALARQL NLRPRQVEVW FQNRRARTKL KQTEVDCEFL KKCCETLTDE
201: NRRLQKELQD LKALKLSQPF YMHMPAATLT MCPSCERLGG GGVGGDTTAV DEETAKGAFS IVTKPRFYNP FTNPSAAC
Arabidopsis Description
HAT22Homeobox-leucine zipper protein HAT22 [Source:UniProtKB/Swiss-Prot;Acc:P46604]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.