Factsheet for Solyc01g090460.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066838	Potato	nucleus	94.06	93.4
KRH40151	Soybean	nucleus	46.15	57.64
CDX71814	Canola	nucleus	57.34	57.54
Solyc08g078300.2.1	Tomato	nucleus	54.9	56.07
VIT_15s0021g01880.t01	Wine grape	nucleus	55.59	55.79
CDY41168	Canola	nucleus	57.34	55.59
KRH66562	Soybean	nucleus	59.44	54.84
Solyc08g007270.2.1	Tomato	nucleus	52.45	54.55
AT3G60390.1	Thale cress	nucleus	59.44	53.97
KRH48783	Soybean	nucleus	59.79	53.94
Bra007530.1-P	Field mustard	nucleus	58.39	53.7
KRH01102	Soybean	nucleus	54.2	53.45
CDX74693	Canola	nucleus	54.2	52.54
Bra004874.1-P	Field mustard	nucleus	54.2	52.54
Solyc06g060830.2.1	Tomato	nucleus	54.2	52.01
CDY27404	Canola	nucleus	55.59	49.84
AT2G44910.1	Thale cress	nucleus	54.9	49.37
CDY37015	Canola	nucleus	54.55	48.6
Bra040335.1-P	Field mustard	nucleus	54.55	48.6
Solyc02g091930.2.1	Tomato	nucleus	39.86	42.54
Solyc02g063520.2.1	Tomato	nucleus	36.71	41.67
Solyc05g008050.1.1	Tomato	nucleus	30.07	41.15
Solyc01g073910.2.1	Tomato	nucleus	46.5	36.44
Solyc04g077220.2.1	Tomato	nucleus	33.57	36.36
Solyc07g054380.1.1	Tomato	nucleus	25.17	34.78
Solyc10g080540.1.1	Tomato	nucleus	42.31	34.18

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HD-ZIP_N	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	PFAM:PF04618	ScanProsite:PS00027	PFscan:PS50071
PFscan:PS51257	PANTHER:PTHR24326	PANTHER:PTHR24326:SF514	UniProt:Q42437	SMART:SM00340	SMART:SM00389
SUPFAM:SSF46689	EnsemblPlantsGene:Solyc01g090460.2	EnsemblPlants:Solyc01g090460.2.1	UniParc:UPI00000A3534	EMBL:X91212	SEG:seg

Description

HD-ZIP protein [Source:UniProtKB/TrEMBL;Acc:Q42437]

Coordinates

chr1:-:84137247..84139223

Molecular Weight (calculated)

32144.9 Da

IEP (calculated)

6.626

GRAVY (calculated)

-0.831

Length

286 amino acids

Sequence
(BLAST)

001: MSSEKEDGLG LSLSLGIMSC PQNNHKTTPS LPLNLLPFMH HHQVSSGRKD EGGERVRGGI DMNEPARMII ECDDEEDEEE DQVLMVSSPN STVSSVSGKR
101: SHDREENEGE RATSSLEDDG GDAAARKKLR LSKEQAAVLE ETFKEHNTLN PKQKLALSKQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEY LKRCCENLTD
201: ENRRLQKEVS ELRALKLSPQ FYMNMSPPTT LTMCPQCERV AVSSSSSSSS VVNATRAQNH QAPVPMNKPW AAMFASKTLD VQRSQM

Best Arabidopsis Sequence Match ( AT2G44910.1 )
(BLAST)

001: MGERDDGLGL SLSLGNSQQK EPSLRLNLMP LTTSSSSSSF QHMHNQNNNS HPQKIHNISW THLFQSSGIK RTTAERNSDA GSFLRGFNVN RAQSSVAVVD
101: LEEEAAVVSS PNSAVSSLSG NKRDLAVARG GDENEAERAS CSRGGGSGGS DDEDGGNGDG SRKKLRLSKD QALVLEETFK EHSTLNPKQK LALAKQLNLR
201: ARQVEVWFQN RRARTKLKQT EVDCEYLKRC CDNLTEENRR LQKEVSELRA LKLSPHLYMH MTPPTTLTMC PSCERVSSSA ATVTAAPSTT TTPTVVGRPS
301: PQRLTPWTAI SLQQKSGR

Arabidopsis Description

ATHB-4Uncharacterized protein At2g44910 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV86]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.