Factsheet for Solyc05g008050.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078329	Potato	nucleus	94.26	91.63
KRH50371	Soybean	nucleus	66.99	65.73
KRG89300	Soybean	nucleus	66.51	63.47
Bra026666.1-P	Field mustard	nucleus	47.37	63.46
VIT_01s0011g04870.t01	Wine grape	nucleus	67.94	63.11
GSMUA_Achr4P06480_001	Banana	nucleus	49.76	62.65
CDY17676	Canola	nucleus	58.85	62.44
CDX77824	Canola	nucleus	59.33	62.0
CDY40379	Canola	nucleus	57.89	61.73
Bra024888.1-P	Field mustard	nucleus	57.89	61.42
Bra017451.1-P	Field mustard	nucleus	46.89	61.25
CDY63827	Canola	nucleus	56.94	60.71
GSMUA_AchrUn_...	Banana	nucleus	60.77	58.26
CDY41083	Canola	nucleus	34.45	55.81
TraesCS3B01G260800.1	Wheat	nucleus	58.85	55.41
TraesCS3A01G231600.1	Wheat	nucleus	58.85	55.41
Zm00001d044081_P001	Maize	nucleus	59.33	55.11
GSMUA_Achr4P13440_001	Banana	nucleus	59.81	55.07
TraesCS3D01G221800.1	Wheat	nucleus	58.37	54.95
Os01t0643600-00	Rice	nucleus	59.81	54.59
EES03343	Sorghum	nucleus	58.85	53.48
AT2G01430.1	Thale cress	plasma membrane	57.89	44.0
Solyc08g007270.2.1	Tomato	nucleus	44.5	33.82
Solyc07g054380.1.1	Tomato	nucleus	33.49	33.82
Solyc08g078300.2.1	Tomato	nucleus	43.54	32.5
Solyc02g091930.2.1	Tomato	nucleus	40.67	31.72
Solyc02g063520.2.1	Tomato	nucleus	37.32	30.95
Solyc06g060830.2.1	Tomato	nucleus	43.06	30.2
Solyc01g090460.2.1	Tomato	nucleus	41.15	30.07
Solyc04g077220.2.1	Tomato	nucleus	36.36	28.79
Solyc10g080540.1.1	Tomato	nucleus	45.45	26.84
Solyc01g073910.2.1	Tomato	nucleus	46.41	26.58

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009628	GO:GO:0009651	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:K4BWX9	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF114	SMART:SM00340	SMART:SM00389
SUPFAM:SSF46689	EnsemblPlantsGene:Solyc05g008050.1	EnsemblPlants:Solyc05g008050.1.1	UniParc:UPI000276608D	SEG:seg	:

Description

Homeobox-leucine zipper protein ATHB-X [Source:Projected from Arabidopsis thaliana (AT1G70920) UniProtKB/Swiss-Prot;Acc:Q8GXM7]

Coordinates

chr5:+:2470506..2473261

Molecular Weight (calculated)

23987.4 Da

IEP (calculated)

6.521

GRAVY (calculated)

-0.965

Length

209 amino acids

Sequence
(BLAST)

001: MEIMPENSTC LELTMSIPGS SSNSSSFPSS GEGGGGRYNM MRELDINQIP SNINEEEISM EEEEEEESSN NNNNNDNING APRKKLRLTK QQSFLLEESF
101: RQNHTLNPKQ KEALAMQLKL KARQVEVWFQ NRRARSKLKQ TEMECEYLKR WFGSLSEQNQ RLKKEVEELR AMKVGPPTVL SPHSCHPLPA STLTMCPHCE
201: RVTRTNVRD

Best Arabidopsis Sequence Match ( AT2G01430.1 )
(BLAST)

001: MIKLLFTYIC TYTYKLYALY HMDYACVCMY KYKGIVTLQV CLFYIKLRVF LSNFTFSSSI LALKNPNNSL IKIMAILPEN SSNLDLTISV PGFSSSPLSD
101: EGSGGGRDQL RLDMNRLPSS EDGDDEEFSH DDGSAPPRKK LRLTREQSRL LEDSFRQNHT LNPKQKEVLA KHLMLRPRQI EVWFQNRRAR SKLKQTEMEC
201: EYLKRWFGSL TEENHRLHRE VEELRAMKVG PTTVNSASSL TMCPRCERVT PAASPSRAVV PVPAKKTFPP QERDR

Arabidopsis Description

ATHB-17Homeobox-leucine zipper protein ATHB-17 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9N6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.