Factsheet for TraesCS3B01G260800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G497500.1
TraesCS3B01G560300.1
TraesCS3D01G505300.1
TraesCS5D01G354900.1
TraesCS5D01G355400.1
TraesCS6A01G145900.1
TraesCS6D01G135200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G70920.1	TraesCS3A01G497500.1	AT5G25160.1	21245844
AT1G70920.1	TraesCS3B01G560300.1	AT5G25160.1	21245844
AT1G70920.1	TraesCS3D01G505300.1	AT5G25160.1	21245844
AT1G70920.1	TraesCS5D01G354900.1	AT5G25160.1	21245844
AT1G70920.1	TraesCS5D01G355400.1	AT5G25160.1	21245844
AT1G70920.1	TraesCS6A01G145900.1	AT5G25160.1	21245844
AT1G70920.1	TraesCS6D01G135200.1	AT5G25160.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G231600.1	Wheat	nucleus	98.65	98.65
TraesCS3D01G221800.1	Wheat	nucleus	97.75	97.75
Os01t0643600-00	Rice	nucleus	90.09	87.34
Zm00001d044081_P001	Maize	nucleus	86.04	84.89
EES03343	Sorghum	nucleus	84.68	81.74
GSMUA_Achr4P06480_001	Banana	nucleus	55.86	74.7
GSMUA_AchrUn_...	Banana	nucleus	72.97	74.31
GSMUA_Achr4P13440_001	Banana	nucleus	73.42	71.81
Bra026666.1-P	Field mustard	nucleus	45.5	64.74
KRH50371	Soybean	nucleus	60.36	62.91
VIT_01s0011g04870.t01	Wine grape	nucleus	62.61	61.78
KRG89300	Soybean	nucleus	60.36	61.19
CDX77824	Canola	nucleus	54.95	61.0
CDY40379	Canola	nucleus	53.6	60.71
CDY17676	Canola	nucleus	53.6	60.41
Bra024888.1-P	Field mustard	nucleus	53.15	59.9
CDY63827	Canola	nucleus	52.7	59.69
Solyc05g008050.1.1	Tomato	nucleus	55.41	58.85
Bra017451.1-P	Field mustard	nucleus	42.34	58.75
PGSC0003DMT400078329	Potato	nucleus	55.86	57.67
CDY41083	Canola	nucleus	30.63	52.71
AT1G70920.1	Thale cress	nucleus	48.2	51.94
CDY03710	Canola	nucleus	47.75	51.71
Bra007952.1-P	Field mustard	nucleus	47.75	51.71
Bra016174.1-P	Field mustard	nucleus	46.4	49.28
CDX96287	Canola	nucleus	40.09	49.17
CDX72758	Canola	nucleus	45.5	48.33
AT2G01430.1	Thale cress	plasma membrane	54.5	44.0
TraesCS2B01G434900.1	Wheat	nucleus	39.64	38.26
TraesCS3B01G000100.1	Wheat	nucleus	38.29	37.28
TraesCS7B01G326300.1	Wheat	nucleus	35.59	35.43
TraesCS4B01G235300.2	Wheat	nucleus	44.14	35.13
TraesCS6B01G148800.1	Wheat	nucleus	31.53	33.49
TraesCS6B01G148700.1	Wheat	nucleus	30.18	32.06
TraesCS6B01G149000.1	Wheat	nucleus	28.38	28.64
TraesCS5B01G231300.1	Wheat	nucleus	45.5	28.45
TraesCS1B01G393100.1	Wheat	nucleus	39.19	28.43
TraesCS1B01G232700.2	Wheat	nucleus	41.44	28.13

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	ScanProsite:PS00027	PFscan:PS50071
PANTHER:PTHR24326	PANTHER:PTHR24326:SF114	SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	EnsemblPlantsGene:TraesCS3B01G260800
EnsemblPlants:TraesCS3B01G260800.1	TIGR:cd00086	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3B:-:418718384..418721923

Molecular Weight (calculated)

24705.6 Da

IEP (calculated)

9.803

GRAVY (calculated)

-0.770

Length

222 amino acids

Sequence
(BLAST)

001: MGATSPSGLE LTMAVPGLSS SSGSEGFVCN NNISNNGGGN MRGLDMNQPA SGGEEEDFLM GGVEEDEEER GAGGPHRPKK LRLSKEQSRL LEESFRLNHT
101: LSPKQKEALA IKLKLRPRQV EVWFQNRRAR TKLKHTEMEC EYLKRCFGSL TEENRRLQRE VEELRAMRMA PPTVLSPHTR QPLPASALTM CPRCERVTAA
201: TGPRITRPPA SPFHPRRPSA AF

Best Arabidopsis Sequence Match ( AT2G01430.1 )
(BLAST)

001: MIKLLFTYIC TYTYKLYALY HMDYACVCMY KYKGIVTLQV CLFYIKLRVF LSNFTFSSSI LALKNPNNSL IKIMAILPEN SSNLDLTISV PGFSSSPLSD
101: EGSGGGRDQL RLDMNRLPSS EDGDDEEFSH DDGSAPPRKK LRLTREQSRL LEDSFRQNHT LNPKQKEVLA KHLMLRPRQI EVWFQNRRAR SKLKQTEMEC
201: EYLKRWFGSL TEENHRLHRE VEELRAMKVG PTTVNSASSL TMCPRCERVT PAASPSRAVV PVPAKKTFPP QERDR

Arabidopsis Description

ATHB-17Homeobox-leucine zipper protein ATHB-17 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9N6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.