Factsheet for Bra007952.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009822.1-P
Bra020486.1-P
Bra036535.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G70920.1	Bra009822.1-P	AT5G25160.1	21245844
AT1G70920.1	Bra020486.1-P	AT5G25160.1	21245844
AT1G70920.1	Bra036535.1-P	AT5G25160.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03710	Canola	nucleus	99.51	99.51
Bra016174.1-P	Field mustard	nucleus	82.44	80.86
AT1G70920.1	Thale cress	nucleus	79.51	79.13
GSMUA_Achr4P06480_001	Banana	nucleus	44.88	55.42
Bra026666.1-P	Field mustard	nucleus	41.46	54.49
Bra017451.1-P	Field mustard	nucleus	40.49	51.88
GSMUA_AchrUn_...	Banana	nucleus	54.15	50.92
Bra024888.1-P	Field mustard	nucleus	48.78	50.76
TraesCS3A01G231600.1	Wheat	nucleus	52.2	48.2
GSMUA_Achr4P13440_001	Banana	nucleus	53.17	48.02
Zm00001d044081_P001	Maize	nucleus	52.68	48.0
TraesCS3D01G221800.1	Wheat	nucleus	51.71	47.75
TraesCS3B01G260800.1	Wheat	nucleus	51.71	47.75
Os01t0643600-00	Rice	nucleus	53.17	47.6
EES03343	Sorghum	nucleus	51.22	45.65
Bra026255.1-P	Field mustard	nucleus	42.44	31.75
Bra024948.1-P	Field mustard	nucleus	41.46	30.8
Bra017489.1-P	Field mustard	nucleus	40.0	30.37
Bra004874.1-P	Field mustard	nucleus	42.93	29.83
Bra040094.1-P	Field mustard	nucleus	41.46	29.82
Bra030200.1-P	Field mustard	nucleus	40.0	29.18
Bra012663.1-P	Field mustard	nucleus	40.49	29.12
Bra010612.1-P	Field mustard	nucleus	38.05	28.89
Bra017853.1-P	Field mustard	nucleus	39.51	28.83
Bra011786.1-P	Field mustard	nucleus	39.02	28.37
Bra040335.1-P	Field mustard	nucleus	43.9	28.04
Bra007530.1-P	Field mustard	nucleus	42.44	27.97
Bra005907.1-P	Field mustard	nucleus	39.51	25.16
Bra009219.1-P	Field mustard	nucleus	41.46	25.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EnsemblPlantsGene:Bra007952	EnsemblPlants:Bra007952.1	EnsemblPlants:Bra007952.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M4CUQ7	PFAM:PF00046
PFAM:PF02183	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF114	SMART:SM00340
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0002546C22	SEG:seg	:	:

Description

AT1G70920 (E=3e-067) ATHB18 | ATHB18 (Arabidopsis thaliana homeobox-leucine zipper protein 18); DNA binding / transcription factor

Coordinates

chrA02:+:12065926..12067829

Molecular Weight (calculated)

23417.8 Da

IEP (calculated)

9.064

GRAVY (calculated)

-0.708

Length

205 amino acids

Sequence
(BLAST)

001: MALSPNSSSL ELSISLPSFS QLSSHPSSGE HMVRDLDINQ TPKTEDREWI MIAAAPHANE EDSNSFGWRR KKLRLTKEQS HLLEESFIQN HTLTSKQKLE
101: LATFLKLSQR QVEVWFQNRR ARSKLKHTEM ECEYLKRCFG SLKEQNRLLQ KEVEELRALK AVPASILTMC PRCERATDAT DNAVKEGTAP RSQSRRTISS
201: SSSLC

Best Arabidopsis Sequence Match ( AT1G70920.1 )
(BLAST)

001: MALSPNSSSL DLTISIPSFS PSPSLGDHHG MRDFDINQTP KTEEDREWMI GATPHVNEDD SNSGGRRRKK LRLTKEQSHL LEESFIQNHT LTPKQKKDLA
101: TFLKLSQRQV EVWFQNRRAR SKLKHTEMEC EYLKRWFGSL KEQNRRLQIE VEELRALKPS STSALTMCPR CERVTDAVDN DSNAVQEGAV LSSRSRMTIS
201: SSSSLC

Arabidopsis Description

ATHB-XHomeobox-leucine zipper protein ATHB-X [Source:UniProtKB/Swiss-Prot;Acc:Q8GXM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.