Factsheet for Bra004874.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74693	Canola	nucleus	100.0	100.0
AT2G44910.1	Thale cress	nucleus	80.34	74.53
Bra040335.1-P	Field mustard	nucleus	75.59	69.47
Bra007530.1-P	Field mustard	nucleus	70.51	66.88
KRH40151	Soybean	nucleus	44.75	57.64
Solyc01g090460.2.1	Tomato	nucleus	52.54	54.2
PGSC0003DMT400066838	Potato	nucleus	52.88	54.17
KRH66562	Soybean	nucleus	55.93	53.23
Bra040094.1-P	Field mustard	nucleus	51.19	52.98
Bra026666.1-P	Field mustard	nucleus	27.8	52.56
KRH01102	Soybean	nucleus	51.53	52.41
KRH48783	Soybean	nucleus	55.93	52.05
Bra017489.1-P	Field mustard	nucleus	46.78	51.11
Bra026255.1-P	Field mustard	nucleus	47.46	51.09
Bra024948.1-P	Field mustard	nucleus	47.12	50.36
Bra017451.1-P	Field mustard	nucleus	26.78	49.38
Bra012663.1-P	Field mustard	nucleus	45.76	47.37
Bra024888.1-P	Field mustard	nucleus	29.83	44.67
Bra007952.1-P	Field mustard	nucleus	29.83	42.93
Bra009219.1-P	Field mustard	nucleus	46.78	40.59
Bra005907.1-P	Field mustard	nucleus	43.39	39.75
Bra016174.1-P	Field mustard	nucleus	28.14	39.71
Bra017853.1-P	Field mustard	nucleus	37.63	39.5
Bra010612.1-P	Field mustard	nucleus	35.93	39.26
Bra030200.1-P	Field mustard	nucleus	36.95	38.79
Bra011786.1-P	Field mustard	nucleus	36.95	38.65

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EnsemblPlantsGene:Bra004874	EnsemblPlants:Bra004874.1	EnsemblPlants:Bra004874.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HD-ZIP_N	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M4CKY8	PFAM:PF00046
PFAM:PF02183	PFAM:PF04618	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF514
SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0002547E37	SEG:seg	:

Description

AT2G44910 (E=2e-088) ATHB4, ATHB-4 | ATHB4 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4); DNA binding / transcription factor

Coordinates

chrA05:-:2237723..2239355

Molecular Weight (calculated)

32327.0 Da

IEP (calculated)

9.129

GRAVY (calculated)

-0.796

Length

295 amino acids

Sequence
(BLAST)

001: MGERDDGLAL SLSLGFSQPK EPSLRLNLMP STTSSSFPRM QNHKNKHLPK KTHHSSWPHL FQPSGTTRIT AERNSNFGSF LRGFDVNRPP SVAVVVDLDE
101: ETAGMSSPNS NVSSVSGNKR DLAAAARGEG DETEGERASC SRGGGSCGSD DEDGGNGDGS RKKLRLSKEQ ALVLEETFKE HSTLNPKQKL ALAKQLNLRT
201: RQVEVWFQNR RARTKLKQTE VDCEYLKRCC DNLTEENRRL QKEVSGLRAL KLSPNLYMQM TPPTTLTMCP SCERVSASSS TVAAPPPPPS SSSAH

Best Arabidopsis Sequence Match ( AT2G44910.1 )
(BLAST)

001: MGERDDGLGL SLSLGNSQQK EPSLRLNLMP LTTSSSSSSF QHMHNQNNNS HPQKIHNISW THLFQSSGIK RTTAERNSDA GSFLRGFNVN RAQSSVAVVD
101: LEEEAAVVSS PNSAVSSLSG NKRDLAVARG GDENEAERAS CSRGGGSGGS DDEDGGNGDG SRKKLRLSKD QALVLEETFK EHSTLNPKQK LALAKQLNLR
201: ARQVEVWFQN RRARTKLKQT EVDCEYLKRC CDNLTEENRR LQKEVSELRA LKLSPHLYMH MTPPTTLTMC PSCERVSSSA ATVTAAPSTT TTPTVVGRPS
301: PQRLTPWTAI SLQQKSGR

Arabidopsis Description

ATHB-4Uncharacterized protein At2g44910 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV86]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.