Factsheet for Bra010612.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007530.1-P
Bra012351.1-P
Bra017489.1-P
Bra024548.1-P
Bra024948.1-P
Bra040094.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37790.1	Bra012351.1-P	AT1G22920.1	21798944
AT4G37790.1	Bra024548.1-P	AT1G22920.1	21798944
AT4G37790.1	Bra007530.1-P	AT3G60390.1	21798944
AT4G37790.1	Bra040094.1-P	AT4G16780.1	21798944
AT4G37790.1	Bra017489.1-P	AT5G47370.1	21798944
AT4G37790.1	Bra024948.1-P	AT5G47370.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60301	Canola	nucleus	99.63	99.63
CDY64220	Canola	nucleus	86.67	97.1
AT4G37790.1	Thale cress	nucleus	85.19	82.73
Bra011786.1-P	Field mustard	nucleus	85.19	81.56
Bra017853.1-P	Field mustard	nucleus	82.96	79.72
Bra030200.1-P	Field mustard	nucleus	71.48	68.68
PGSC0003DMT400055199	Potato	nucleus	55.56	56.39
Solyc02g091930.2.1	Tomato	nucleus	55.56	55.97
PGSC0003DMT400026968	Potato	nucleus	50.0	53.15
KRH28314	Soybean	nucleus	55.19	52.65
Solyc02g063520.2.1	Tomato	nucleus	48.89	52.38
VIT_00s0732g00010.t01	Wine grape	nucleus	53.33	50.88
KRH77172	Soybean	nucleus	53.33	50.88
KRH04366	Soybean	nucleus	54.07	46.79
KRH58171	Soybean	extracellular, nucleus	51.85	45.9
Bra026666.1-P	Field mustard	nucleus	25.56	44.23
Bra017451.1-P	Field mustard	nucleus	24.44	41.25
Bra024948.1-P	Field mustard	nucleus	41.48	40.58
Bra040094.1-P	Field mustard	nucleus	41.85	39.65
Bra017489.1-P	Field mustard	nucleus	39.63	39.63
Bra007952.1-P	Field mustard	nucleus	28.89	38.05
Bra026255.1-P	Field mustard	nucleus	38.52	37.96
Bra024888.1-P	Field mustard	nucleus	27.41	37.56
Bra016174.1-P	Field mustard	nucleus	28.52	36.84
Bra012663.1-P	Field mustard	nucleus	38.89	36.84
Bra007530.1-P	Field mustard	nucleus	41.48	36.01
Bra004874.1-P	Field mustard	nucleus	39.26	35.93
Bra005907.1-P	Field mustard	nucleus	41.85	35.09
Bra040335.1-P	Field mustard	nucleus	41.11	34.58
Bra009219.1-P	Field mustard	nucleus	40.74	32.35

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EnsemblPlantsGene:Bra010612	EnsemblPlants:Bra010612.1	EnsemblPlants:Bra010612.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M4D2B2	InterPro:MIP_CS	PFAM:PF00046
PFAM:PF02183	ScanProsite:PS00027	ScanProsite:PS00221	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF327
SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI00025463BF	SEG:seg	:

Description

AT4G37790 (E=1e-099) HAT22 | HAT22; transcription factor

Coordinates

chrA08:+:15562651..15563652

Molecular Weight (calculated)

29776.3 Da

IEP (calculated)

8.325

GRAVY (calculated)

-0.610

Length

270 amino acids

Sequence
(BLAST)

001: MGLDDSCNTG LVLGLGLSPT HNSYNYAIKK SSATVDHHVN PSLTLSLSGE SYKVEKTVSG AGDQIYRQTS SHSGISSFSS GRIKREREVC GDGEEEAEET
101: EKRVVCSSVR DDHEDEEGFS ARKKLRLTKQ QSVLLEENFK MHSTLNPKQK QALARQLSLR PRQVEVWFQN RRARTKLKQT EVDCEFLKKC CETLTDENRR
201: LQKELQDLKA LKMSQPFYMH MPPATLMVCP SCERLGGGVA GGGRGSTVAV DGGTAKGAFS IPFINPSAAC

Best Arabidopsis Sequence Match ( AT4G37790.1 )
(BLAST)

001: MGLDDSCNTG LVLGLGLSPT PNNYNHAIKK SSSTVDHRFI RLDPSLTLSL SGESYKIKTG AGAGDQICRQ TSSHSGISSF SSGRVKRERE ISGGDGEEEA
101: EETTERVVCS RVSDDHDDEE GVSARKKLRL TKQQSALLED NFKLHSTLNP KQKQALARQL NLRPRQVEVW FQNRRARTKL KQTEVDCEFL KKCCETLTDE
201: NRRLQKELQD LKALKLSQPF YMHMPAATLT MCPSCERLGG GGVGGDTTAV DEETAKGAFS IVTKPRFYNP FTNPSAAC

Arabidopsis Description

HAT22Homeobox-leucine zipper protein HAT22 [Source:UniProtKB/Swiss-Prot;Acc:P46604]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.