Factsheet for Bra017853.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007530.1-P
Bra012351.1-P
Bra017489.1-P
Bra024548.1-P
Bra024948.1-P
Bra040094.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37790.1	Bra012351.1-P	AT1G22920.1	21798944
AT4G37790.1	Bra024548.1-P	AT1G22920.1	21798944
AT4G37790.1	Bra007530.1-P	AT3G60390.1	21798944
AT4G37790.1	Bra040094.1-P	AT4G16780.1	21798944
AT4G37790.1	Bra017489.1-P	AT5G47370.1	21798944
AT4G37790.1	Bra024948.1-P	AT5G47370.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G37790.1	Thale cress	nucleus	86.12	87.05
Bra011786.1-P	Field mustard	nucleus	84.7	84.4
Bra010612.1-P	Field mustard	nucleus	79.72	82.96
Bra030200.1-P	Field mustard	nucleus	73.31	73.31
PGSC0003DMT400055199	Potato	nucleus	56.58	59.77
Solyc02g091930.2.1	Tomato	nucleus	56.23	58.96
VIT_00s0732g00010.t01	Wine grape	nucleus	56.23	55.83
KRH28314	Soybean	nucleus	55.87	55.48
KRH77172	Soybean	nucleus	55.16	54.77
Solyc02g063520.2.1	Tomato	nucleus	49.11	54.76
PGSC0003DMT400026968	Potato	nucleus	49.47	54.72
KRH04366	Soybean	nucleus	55.87	50.32
KRH58171	Soybean	extracellular, nucleus	53.38	49.18
Bra026666.1-P	Field mustard	nucleus	26.33	47.44
Bra017451.1-P	Field mustard	nucleus	25.27	44.38
Bra024948.1-P	Field mustard	nucleus	40.57	41.3
Bra017489.1-P	Field mustard	nucleus	39.5	41.11
Bra040094.1-P	Field mustard	nucleus	41.64	41.05
Bra026255.1-P	Field mustard	nucleus	39.15	40.15
Bra024888.1-P	Field mustard	nucleus	28.11	40.1
Bra007952.1-P	Field mustard	nucleus	28.83	39.51
Bra016174.1-P	Field mustard	nucleus	28.83	38.76
Bra012663.1-P	Field mustard	nucleus	38.79	38.25
Bra005907.1-P	Field mustard	nucleus	43.42	37.89
Bra004874.1-P	Field mustard	nucleus	39.5	37.63
Bra040335.1-P	Field mustard	nucleus	42.35	37.07
Bra007530.1-P	Field mustard	nucleus	40.93	36.98
Bra009219.1-P	Field mustard	nucleus	42.7	35.29

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EnsemblPlantsGene:Bra017853	EnsemblPlants:Bra017853.1	EnsemblPlants:Bra017853.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M4DMW6	PFAM:PF00046	PFAM:PF02183
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF327	SMART:SM00340	SMART:SM00389
SUPFAM:SSF46689	UniParc:UPI0002540D60	SEG:seg	:	:	:

Description

AT4G37790 (E=1e-120) HAT22 | HAT22; transcription factor

Coordinates

chrA03:+:30988500..30989550

Molecular Weight (calculated)

30477.3 Da

IEP (calculated)

8.419

GRAVY (calculated)

-0.517

Length

281 amino acids

Sequence
(BLAST)

001: MGLDDSCNTG LVLGLGLSIT PNIYNPAIKK TSTTVDHHLD PSLTLSLSGE SYMTKTVDMT VAGAGSQVCR QTSSHSGISS FSSGRVKRER DICGEEEAGE
101: TTERVVCSRV SDDHEDEEGV SARKKLRLTK QQSALLEDSF KLHSTLNPKQ KQALARQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEFLKK CCETLTDENR
201: RLQKELQDLK ALKMSQPFYM HMPAATLTMC PSCERLGGGG GGAAGGGGGT AEVNGGTAKG AFSVVTKPRF FNPLTSPSTA C

Best Arabidopsis Sequence Match ( AT4G37790.1 )
(BLAST)

001: MGLDDSCNTG LVLGLGLSPT PNNYNHAIKK SSSTVDHRFI RLDPSLTLSL SGESYKIKTG AGAGDQICRQ TSSHSGISSF SSGRVKRERE ISGGDGEEEA
101: EETTERVVCS RVSDDHDDEE GVSARKKLRL TKQQSALLED NFKLHSTLNP KQKQALARQL NLRPRQVEVW FQNRRARTKL KQTEVDCEFL KKCCETLTDE
201: NRRLQKELQD LKALKLSQPF YMHMPAATLT MCPSCERLGG GGVGGDTTAV DEETAKGAFS IVTKPRFYNP FTNPSAAC

Arabidopsis Description

HAT22Homeobox-leucine zipper protein HAT22 [Source:UniProtKB/Swiss-Prot;Acc:P46604]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.