CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01102
KRH04179
KRH28155
KRH40151
KRH48783
KRH52586
KRH57467
KRH61926
KRH66562
KRH77331

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37790.1	KRH52586	AT1G22920.1	21798944
AT4G37790.1	KRH61926	AT1G22920.1	21798944
AT4G37790.1	KRH01102	AT3G60390.1	21798944
AT4G37790.1	KRH40151	AT3G60390.1	21798944
AT4G37790.1	KRH48783	AT3G60390.1	21798944
AT4G37790.1	KRH66562	AT3G60390.1	21798944
AT4G37790.1	KRH04179	AT4G16780.1	21798944
AT4G37790.1	KRH28155	AT4G16780.1	21798944
AT4G37790.1	KRH57467	AT4G16780.1	21798944
AT4G37790.1	KRH77331	AT4G16780.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58171	Soybean	extracellular, nucleus	89.74	91.8
KRH77172	Soybean	nucleus	67.63	74.56
KRH28314	Soybean	nucleus	66.99	73.85
VIT_00s0732g00010.t01	Wine grape	nucleus	60.58	66.78
PGSC0003DMT400055199	Potato	nucleus	49.04	57.52
Solyc02g091930.2.1	Tomato	nucleus	49.36	57.46
AT4G37790.1	Thale cress	nucleus	50.32	56.47
AT2G22800.1	Thale cress	nucleus	49.36	56.2
CDY64220	Canola	nucleus	43.27	56.02
Bra017853.1-P	Field mustard	nucleus	50.32	55.87
Bra030200.1-P	Field mustard	nucleus	49.36	54.8
Bra010612.1-P	Field mustard	nucleus	46.79	54.07
CDY67919	Canola	nucleus	48.72	53.9
Bra011786.1-P	Field mustard	nucleus	48.72	53.9
CDX69330	Canola	nucleus	48.72	53.9
CDY60301	Canola	nucleus	46.47	53.7
Solyc02g063520.2.1	Tomato	nucleus	42.95	53.17
PGSC0003DMT400026968	Potato	nucleus	43.27	53.15
KRH40151	Soybean	nucleus	33.97	46.29
KRH19131	Soybean	nucleus	31.41	46.01
KRH50371	Soybean	nucleus	31.09	45.54
KRH02731	Soybean	nucleus	30.13	44.98
KRH77331	Soybean	nucleus	38.46	44.78
KRH12370	Soybean	nucleus	32.05	44.25
KRG89300	Soybean	nucleus	30.77	43.84
KRH28155	Soybean	nucleus	39.1	42.81
KRH37372	Soybean	nucleus	32.05	42.19
KRH04179	Soybean	nucleus	40.06	41.81
KRH57467	Soybean	nucleus	39.74	41.61
KRH01102	Soybean	nucleus	37.5	40.34
KRH67080	Soybean	nucleus	36.86	39.93
KRH15480	Soybean	nucleus	38.46	39.34
KRH61469	Soybean	nucleus	36.54	39.31
KRH71831	Soybean	plastid	41.03	38.91
KRH38083	Soybean	nucleus	40.71	38.84
KRG95402	Soybean	nucleus, plastid	36.22	38.7
KRH66562	Soybean	nucleus	38.14	38.39
KRH48783	Soybean	nucleus	38.78	38.17
KRG88660	Soybean	nucleus	37.5	37.86
KRH43419	Soybean	nucleus	41.03	33.95
KRH13873	Soybean	nucleus	41.03	33.33

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100807123	MapMan:15.5.3.1	UniProt:A0A0K2CTB0	EMBL:ACUP02010405	ncoils:Coil
EnsemblPlantsGene:GLYMA_17G157600	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	EnsemblPlants:KRH04366	ProteinID:KRH04366	ProteinID:KRH04366.1
EMBL:KT031173	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	ScanProsite:PS00027	PFscan:PS50071
PANTHER:PTHR24326	PANTHER:PTHR24326:SF327	SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000189DA41
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:13476226..13478088

Molecular Weight (calculated)

34424.7 Da

IEP (calculated)

7.990

GRAVY (calculated)

-0.663

Length

312 amino acids

Sequence
(BLAST)

001: MMGLDQDASS NSGLHLILGL ALTATTTTTP SLPSISNKLD HVDHHHHLIT LRPTTKSPYN SSEAEPSLTL GLSRESYLKV PKNIIGQNSN NKVSSCDDPL
101: DHLSTQTNSP HHSAVSSFSS GRVKRERDLS CEEVVDATEI DQRDHSCEGI VRATDEDEDG TAARKKLRLS KEQSALLEES FKQHSTLNPK QKQALAKQLN
201: LRPRQVEVWF QNRRARTKLK QTEVDCEFLK KCCETLTDEN RRLQKELQEL KALKLAQPLY MPMPAATLTM CPSCERLGGG INGGGGGSPK TPFSMAPKPH
301: FFNPFANPSA AC

Best Arabidopsis Sequence Match ( AT4G37790.1 )
(BLAST)

001: MGLDDSCNTG LVLGLGLSPT PNNYNHAIKK SSSTVDHRFI RLDPSLTLSL SGESYKIKTG AGAGDQICRQ TSSHSGISSF SSGRVKRERE ISGGDGEEEA
101: EETTERVVCS RVSDDHDDEE GVSARKKLRL TKQQSALLED NFKLHSTLNP KQKQALARQL NLRPRQVEVW FQNRRARTKL KQTEVDCEFL KKCCETLTDE
201: NRRLQKELQD LKALKLSQPF YMHMPAATLT MCPSCERLGG GGVGGDTTAV DEETAKGAFS IVTKPRFYNP FTNPSAAC

Arabidopsis Description

HAT22Homeobox-leucine zipper protein HAT22 [Source:UniProtKB/Swiss-Prot;Acc:P46604]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.