CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91429
KRG95402
KRH01102
KRH04179
KRH04275
KRH13873
KRH28155
KRH28216
KRH35393
KRH38083
KRH40151
KRH43419
KRH48783
KRH52586
KRH57467
KRH57556
KRH61926
KRH66562
KRH67080
KRH71831
KRH77271
KRH77331

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G16780.1	KRH52586	AT1G22920.1	21798944
AT4G16780.1	KRH61926	AT1G22920.1	21798944
AT4G16780.1	KRH52586	AT1G71230.1	21798944
AT4G16780.1	KRH61926	AT1G71230.1	21798944
AT4G16780.1	KRH01102	AT3G60390.1	21798944
AT4G16780.1	KRH40151	AT3G60390.1	21798944
AT4G16780.1	KRH48783	AT3G60390.1	21798944
AT4G16780.1	KRH66562	AT3G60390.1	21798944
AT4G16780.1	KRH04179	AT4G16780.1	21798944
AT4G16780.1	KRH28155	AT4G16780.1	21798944
AT4G16780.1	KRH57467	AT4G16780.1	21798944
AT4G16780.1	KRH77331	AT4G16780.1	21798944
AT4G16780.1	KRH04275	AT4G17680.1	21798944
AT4G16780.1	KRH28216	AT4G17680.1	21798944
AT4G16780.1	KRH57556	AT4G17680.1	21798944
AT4G16780.1	KRH77271	AT4G17680.1	21798944
AT4G16780.1	KRG95402	AT5G06710.1	21798944
AT4G16780.1	KRH13873	AT5G06710.1	21798944
AT4G16780.1	KRH38083	AT5G06710.1	21798944
AT4G16780.1	KRH43419	AT5G06710.1	21798944
AT4G16780.1	KRH67080	AT5G06710.1	21798944
AT4G16780.1	KRH71831	AT5G06710.1	21798944
AT4G16780.1	KRG91429	AT5G51910.1	21798944
AT4G16780.1	KRH35393	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04179	Soybean	nucleus	91.95	91.64
KRH77331	Soybean	nucleus	73.83	82.09
KRH28155	Soybean	nucleus	76.17	79.65
VIT_00s0299g00100.t01	Wine grape	nucleus	77.85	78.11
AT4G16780.1	Thale cress	nucleus	63.42	66.55
Bra040094.1-P	Field mustard	nucleus	61.41	64.21
Solyc06g060830.2.1	Tomato	nucleus	63.09	63.09
GSMUA_Achr5P13530_001	Banana	nucleus	59.06	63.08
GSMUA_Achr7P06950_001	Banana	nucleus	38.26	62.98
GSMUA_Achr11P...	Banana	nucleus	50.67	61.13
GSMUA_Achr2P10040_001	Banana	nucleus	59.73	60.96
PGSC0003DMT400062081	Potato	nucleus	62.08	60.66
GSMUA_Achr1P01670_001	Banana	nucleus	59.4	59.6
GSMUA_Achr4P21600_001	Banana	nucleus	55.03	59.21
KRH40151	Soybean	nucleus	44.3	57.64
Zm00001d002754_P001	Maize	nucleus	42.62	55.95
KRH66562	Soybean	nucleus	58.05	55.81
KRH48783	Soybean	nucleus	59.06	55.52
HORVU2Hr1G097940.2	Barley	nucleus	41.28	54.67
EES12613	Sorghum	nucleus	42.62	54.51
GSMUA_Achr1P04360_001	Banana	nucleus	55.03	54.3
TraesCS2A01G415900.1	Wheat	nucleus	40.94	53.74
TraesCS2B01G434900.1	Wheat	nucleus	40.94	53.04
TraesCS2D01G412900.1	Wheat	nucleus	40.94	53.04
KRH01102	Soybean	nucleus	51.01	52.41
Os04t0548700-01	Rice	nucleus	42.28	51.01
KRH50371	Soybean	nucleus	33.56	46.95
KRG89300	Soybean	nucleus	33.22	45.21
KRH67080	Soybean	nucleus	43.29	44.79
TraesCS1D01G220900.1	Wheat	nucleus	48.66	44.48
Zm00001d029934_P001	Maize	nucleus	47.65	44.24
TraesCS1B01G232700.2	Wheat	nucleus	48.32	44.04
Os10t0561800-01	Rice	nucleus	45.64	43.73
KRG95402	Soybean	nucleus, plastid	42.62	43.49
TraesCS1A01G219200.1	Wheat	nucleus	47.99	43.47
GSMUA_AchrUn_...	Banana	plastid	45.3	43.27
KRH28314	Soybean	nucleus	40.6	42.76
KRH77172	Soybean	nucleus	40.27	42.4
KRH38083	Soybean	nucleus	45.97	41.9
KRH71831	Soybean	plastid	45.97	41.64
KRH02731	Soybean	nucleus	29.19	41.63
EER94486	Sorghum	nucleus	48.32	41.62
KRH12370	Soybean	nucleus	31.21	41.15
KRH19131	Soybean	nucleus	28.86	40.38
KRH04366	Soybean	nucleus	41.61	39.74
HORVU1Hr1G055930.1	Barley	nucleus	47.32	39.06
KRH58171	Soybean	extracellular, nucleus	39.93	39.02
KRH37372	Soybean	nucleus	30.54	38.4
KRH43419	Soybean	nucleus	46.98	37.14
KRH13873	Soybean	nucleus	47.32	36.72
KRH15480	Soybean	nucleus	33.22	32.46
KRH61469	Soybean	nucleus	31.54	32.41
KRG88660	Soybean	nucleus	33.22	32.04

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	UniProt:A0A0R0JYK1	EMBL:ACUP02002835	ncoils:Coil	EnsemblPlantsGene:GLYMA_05G062700
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HD-ZIP_N	InterPro:HTH_motif
InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	EnsemblPlants:KRH57467	ProteinID:KRH57467
ProteinID:KRH57467.1	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	PFAM:PF04618	PRINTS:PR00031
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF210	SMART:SM00340	SMART:SM00389
SUPFAM:SSF46689	UniParc:UPI000189DA44	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:5951884..5954125

Molecular Weight (calculated)

33331.1 Da

IEP (calculated)

7.833

GRAVY (calculated)

-0.846

Length

298 amino acids

Sequence
(BLAST)

001: MMVQKEDLGL SLSLNFPHHS TPNPQHLSLM SSSTHSSSPS GFNPQKPSWN EAFASSDPDR NSDTCRGETR SFLRGIDVNR LPSAVDAEEE AGVSSPNSTV
101: SCVSGKRSER EPNGEEHDMD RACSRGISDE EDAETSRKKL RLSKDQSAIL EESFKEHNTL NPKQKLALAK QLGLRPRQVE VWFQNRRART KLKQTEVDCE
201: VLKRCCENLT EENRRLQKEV QELRALKLSP QFYMQMSPPT TLTMCPSCER VAVSSSAVGS ATRHHPMAHA HAHARPMPNG PWASAAPIPH RPFDAFHQ

Best Arabidopsis Sequence Match ( AT4G16780.1 )
(BLAST)

001: MMFEKDDLGL SLGLNFPKKQ INLKSNPSVS VTPSSSSFGL FRRSSWNESF TSSVPNSDSS QKETRTFIRG IDVNRPPSTA EYGDEDAGVS SPNSTVSSST
101: GKRSEREEDT DPQGSRGISD DEDGDNSRKK LRLSKDQSAI LEETFKDHST LNPKQKQALA KQLGLRARQV EVWFQNRRAR TKLKQTEVDC EFLRRCCENL
201: TEENRRLQKE VTELRALKLS PQFYMHMSPP TTLTMCPSCE HVSVPPPQPQ AATSAHHRSL PVNAWAPATR ISHGLTFDAL RPRS

Arabidopsis Description

HAT4Homeobox-leucine zipper protein HAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q05466]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.