Factsheet for GSMUA_AchrUn_randomP09030_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P00560_001
GSMUA_Achr1P01670_001
GSMUA_Achr1P04360_001
GSMUA_Achr2P10040_001
GSMUA_Achr2P12040_001
GSMUA_Achr2P18250_001
GSMUA_Achr3P07740_001
GSMUA_Achr3P12320_001
GSMUA_Achr4P21600_001
GSMUA_Achr4P21690_001
GSMUA_Achr4P27220_001
GSMUA_Achr4P30100_001
GSMUA_Achr5P03320_001
GSMUA_Achr5P13530_001
GSMUA_Achr7P02380_001
GSMUA_Achr7P06950_001
GSMUA_Achr8P00050_001
GSMUA_Achr8P14860_001
GSMUA_Achr8P22800_001
GSMUA_Achr9P15710_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G16780.1	GSMUA_Achr10P...	AT1G22920.1	21798944
AT4G16780.1	GSMUA_Achr10P...	AT1G71230.1	21798944
AT4G16780.1	GSMUA_Achr11P...	AT4G16780.1	21798944
AT4G16780.1	GSMUA_Achr1P01670_001	AT4G16780.1	21798944
AT4G16780.1	GSMUA_Achr1P04360_001	AT4G16780.1	21798944
AT4G16780.1	GSMUA_Achr2P10040_001	AT4G16780.1	21798944
AT4G16780.1	GSMUA_Achr4P21600_001	AT4G16780.1	21798944
AT4G16780.1	GSMUA_Achr5P13530_001	AT4G16780.1	21798944
AT4G16780.1	GSMUA_Achr7P06950_001	AT4G16780.1	21798944
AT4G16780.1	GSMUA_AchrUn_...	AT4G16780.1	21798944
AT4G16780.1	GSMUA_Achr1P00560_001	AT4G17680.1	21798944
AT4G16780.1	GSMUA_Achr2P12040_001	AT4G17680.1	21798944
AT4G16780.1	GSMUA_Achr2P18250_001	AT4G17680.1	21798944
AT4G16780.1	GSMUA_Achr4P21690_001	AT4G17680.1	21798944
AT4G16780.1	GSMUA_Achr4P30100_001	AT4G17680.1	21798944
AT4G16780.1	GSMUA_Achr8P14860_001	AT4G17680.1	21798944
AT4G16780.1	GSMUA_Achr3P07740_001	AT5G06710.1	21798944
AT4G16780.1	GSMUA_Achr7P02380_001	AT5G06710.1	21798944
AT4G16780.1	GSMUA_Achr8P22800_001	AT5G06710.1	21798944
AT4G16780.1	GSMUA_Achr9P15710_001	AT5G06710.1	21798944
AT4G16780.1	GSMUA_Achr11P...	AT5G51910.1	21798944
AT4G16780.1	GSMUA_Achr11P...	AT5G51910.1	21798944
AT4G16780.1	GSMUA_Achr3P12320_001	AT5G51910.1	21798944
AT4G16780.1	GSMUA_Achr4P27220_001	AT5G51910.1	21798944
AT4G16780.1	GSMUA_Achr5P03320_001	AT5G51910.1	21798944
AT4G16780.1	GSMUA_Achr8P00050_001	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G097940.2	Barley	nucleus	40.38	56.0
GSMUA_Achr3P07740_001	Banana	nucleus	34.62	55.67
TraesCS2A01G415900.1	Wheat	nucleus	40.06	55.07
TraesCS2B01G434900.1	Wheat	nucleus	40.38	54.78
EES12613	Sorghum	nucleus	40.71	54.51
Zm00001d002754_P001	Maize	nucleus	39.42	54.19
TraesCS2D01G412900.1	Wheat	nucleus	39.74	53.91
Os04t0548700-01	Rice	nucleus	40.71	51.42
GSMUA_Achr11P...	Banana	nucleus	40.06	50.61
GSMUA_Achr4P21600_001	Banana	nucleus	44.55	50.18
KRH77331	Soybean	nucleus	42.63	49.63
GSMUA_Achr4P06480_001	Banana	nucleus	26.28	49.4
PGSC0003DMT400067540	Potato	nucleus	42.63	48.36
GSMUA_Achr5P13530_001	Banana	nucleus	42.63	47.67
Solyc08g078300.2.1	Tomato	nucleus	42.63	47.5
Solyc08g007270.2.1	Tomato	nucleus	41.35	46.91
VIT_00s0299g00100.t01	Wine grape	nucleus	44.55	46.8
Zm00001d029934_P001	Maize	nucleus	48.08	46.73
Os10t0561800-01	Rice	nucleus	46.47	46.62
GSMUA_Achr7P15910_001	Banana	nucleus	22.76	46.1
KRH28155	Soybean	nucleus	41.99	45.96
GSMUA_Achr2P10040_001	Banana	nucleus	42.95	45.89
EER94486	Sorghum	nucleus	50.32	45.38
PGSC0003DMT400032546	Potato	nucleus	40.71	45.36
KRH57467	Soybean	nucleus	43.27	45.3
KRH04179	Soybean	nucleus	43.27	45.15
TraesCS1D01G220900.1	Wheat	nucleus	47.12	45.09
TraesCS1B01G232700.2	Wheat	nucleus	47.12	44.95
Bra040094.1-P	Field mustard	nucleus	41.03	44.91
AT4G16780.1	Thale cress	nucleus	40.71	44.72
TraesCS1A01G219200.1	Wheat	nucleus	47.12	44.68
GSMUA_Achr1P01670_001	Banana	nucleus	42.31	44.44
GSMUA_AchrUn_...	Banana	nucleus	30.77	44.04
GSMUA_Achr7P02380_001	Banana	nucleus	40.38	43.75
GSMUA_Achr7P06950_001	Banana	nucleus	25.32	43.65
GSMUA_Achr3P15190_001	Banana	nucleus	32.05	42.19
GSMUA_Achr4P13440_001	Banana	nucleus	30.45	41.85
GSMUA_Achr1P04360_001	Banana	nucleus	40.38	41.72
Solyc06g060830.2.1	Tomato	nucleus	39.74	41.61
GSMUA_Achr10P...	Banana	nucleus	24.04	41.21
HORVU1Hr1G055930.1	Barley	nucleus	47.44	41.0
PGSC0003DMT400062081	Potato	nucleus	40.06	40.98
GSMUA_Achr8P22800_001	Banana	nucleus	34.62	40.75
GSMUA_Achr9P15710_001	Banana	nucleus	40.06	40.06
GSMUA_Achr4P01350_001	Banana	nucleus	32.69	40.0
GSMUA_Achr9P09800_001	Banana	nucleus	30.45	39.42
GSMUA_Achr7P05000_001	Banana	nucleus	23.08	38.71
GSMUA_Achr2P04490_001	Banana	nucleus	28.21	38.6
GSMUA_AchrUn_...	Banana	nucleus	33.65	38.04
GSMUA_Achr7P27530_001	Banana	nucleus	30.77	37.35
GSMUA_Achr8P26480_001	Banana	nucleus	33.33	37.01
GSMUA_Achr9P26300_001	Banana	nucleus	29.81	36.05
GSMUA_Achr6P30180_001	Banana	nucleus	28.53	35.32
GSMUA_Achr1P10390_001	Banana	nucleus	25.96	34.91
GSMUA_Achr8P05100_001	Banana	nucleus	30.45	33.45
GSMUA_Achr6P31710_001	Banana	nucleus	30.13	32.87

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_AchrUn_randomG09030_001	EnsemblPlants:GSMUA_AchrUn_randomP09030_001	EnsemblPlants:GSMUA_AchrUn_randomT09030_001	InterPro:HD-ZIP_N	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M0U7L3	PFAM:PF00046
PFAM:PF02183	PFAM:PF04618	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF514
SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000296DDDD	SEG:seg	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_299.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG09030_001]

Coordinates

chrchrUn_random:+:41919344..41922146

Molecular Weight (calculated)

35285.6 Da

IEP (calculated)

10.118

GRAVY (calculated)

-1.055

Length

312 amino acids

Sequence
(BLAST)

001: MARVAANRPA VSSACSHVPR QGHARPRDGE LPSPFLPREI KPHPRRPTWH ASAQMDRRRD STCRTDPRPR PLHRGIDVNQ EPPGAAERDS EEDAGASSPN
101: STLSSASGKR AERGHHLGVD EHDTDRDCSR GISDEEDGEG SRKKLRLSKD QAAILEESFK EHNTLNPKQK LALAKRLNLR PRQVEVWFQN RRARTKLKQT
201: EVDCEFLKRC CETLTEENRR LQKEVQELRA LKVSPRLYMH MTPPTTLSMC PSCERVSNAA TTTTTAASTP TPETNTPHPM SQHHQFIHHR PFPAPWAPIP
301: LRPCLKTPPQ RS

Best Arabidopsis Sequence Match ( AT4G16780.1 )
(BLAST)

001: MMFEKDDLGL SLGLNFPKKQ INLKSNPSVS VTPSSSSFGL FRRSSWNESF TSSVPNSDSS QKETRTFIRG IDVNRPPSTA EYGDEDAGVS SPNSTVSSST
101: GKRSEREEDT DPQGSRGISD DEDGDNSRKK LRLSKDQSAI LEETFKDHST LNPKQKQALA KQLGLRARQV EVWFQNRRAR TKLKQTEVDC EFLRRCCENL
201: TEENRRLQKE VTELRALKLS PQFYMHMSPP TTLTMCPSCE HVSVPPPQPQ AATSAHHRSL PVNAWAPATR ISHGLTFDAL RPRS

Arabidopsis Description

HAT4Homeobox-leucine zipper protein HAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q05466]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.