Factsheet for GSMUA_Achr6P30180_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P09800_001	Banana	nucleus	58.73	61.41
GSMUA_Achr9P26300_001	Banana	nucleus	59.52	58.14
GSMUA_Achr6P31710_001	Banana	nucleus	65.48	57.69
GSMUA_Achr3P15190_001	Banana	nucleus	45.63	48.52
GSMUA_Achr8P26480_001	Banana	nucleus	50.4	45.2
GSMUA_Achr4P01350_001	Banana	nucleus	45.63	45.1
GSMUA_Achr7P15910_001	Banana	nucleus	27.38	44.81
VIT_18s0001g08410.t01	Wine grape	nucleus	46.43	43.33
GSMUA_Achr3P07740_001	Banana	nucleus	33.33	43.3
GSMUA_Achr4P06480_001	Banana	nucleus	28.17	42.77
GSMUA_AchrUn_...	Banana	nucleus	45.63	41.67
GSMUA_Achr10P...	Banana	nucleus	29.37	40.66
GSMUA_Achr7P27530_001	Banana	nucleus	39.29	38.52
GSMUA_Achr7P06950_001	Banana	nucleus	27.38	38.12
GSMUA_AchrUn_...	Banana	nucleus	32.14	37.16
GSMUA_Achr7P05000_001	Banana	nucleus	27.38	37.1
GSMUA_Achr11P...	Banana	nucleus	35.71	36.44
GSMUA_Achr8P05100_001	Banana	nucleus	40.08	35.56
GSMUA_Achr2P04490_001	Banana	nucleus	32.14	35.53
GSMUA_Achr4P13440_001	Banana	nucleus	31.75	35.24
GSMUA_Achr5P13530_001	Banana	nucleus	38.89	35.13
GSMUA_Achr7P02380_001	Banana	nucleus	39.29	34.38
GSMUA_Achr4P21600_001	Banana	nucleus	37.7	34.3
GSMUA_Achr1P10390_001	Banana	nucleus	31.35	34.05
GSMUA_Achr1P01670_001	Banana	nucleus	40.08	34.01
KRH61469	Soybean	nucleus	38.49	33.45
KRH15480	Soybean	nucleus	40.48	33.44
GSMUA_Achr2P10040_001	Banana	nucleus	38.49	33.22
KRG88660	Soybean	nucleus	39.68	32.36
GSMUA_Achr1P04360_001	Banana	nucleus	38.49	32.12
GSMUA_Achr8P22800_001	Banana	nucleus	32.54	30.94
GSMUA_Achr9P15710_001	Banana	nucleus	36.9	29.81
GSMUA_AchrUn_...	Banana	plastid	35.32	28.53

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr6G30180_001	EnsemblPlants:GSMUA_Achr6P30180_001	EnsemblPlants:GSMUA_Achr6T30180_001	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M0TBG3	PFAM:PF00046	ScanProsite:PS00027
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF514	SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689
UniParc:UPI0002968B0E	SEG:seg	:	:	:	:

Description

Putative Homeobox-leucine zipper protein HOX19 [Source:GMGC_GENE;Acc:GSMUA_Achr6G30180_001]

Coordinates

chr6:-:30248953..30249889

Molecular Weight (calculated)

27854.9 Da

IEP (calculated)

9.496

GRAVY (calculated)

-0.710

Length

252 amino acids

Sequence
(BLAST)

001: MCSTGLSLAL NYYGKSTDSS VGNRPRPSSR LELEISSSAA AAIEPSLTLG LPGDGRKAWS VGTQSSPTHS VMSSFPGGHP SKINGENDEA EKIWPRISDE
101: EEYGTARKKL RLTKGQSALL EDKFREHGTL NPKQKQDLAQ QLNLRPRQVE VWFQNRRARS KLKKTEVELE FLRKCCERLT EENIRLQEEL QELKSQKSLA
201: PRYTQLHEAA PAFAMCPSCN KVTGASDGSG SGLLVAASKR HFSNPFAHCA AR

Best Arabidopsis Sequence Match ( AT2G22800.1 )
(BLAST)

001: MGFDDTCNTG LVLGLGPSPI PNNYNSTIRQ SSVYKLEPSL TLCLSGDPSV TVVTGADQLC RQTSSHSGVS SFSSGRVVKR ERDGGEESPE EEEMTERVIS
101: DYHEDEEGIS ARKKLRLTKQ QSALLEESFK DHSTLNPKQK QVLARQLNLR PRQVEVWFQN RRARTKLKQT EVDCEFLKKC CETLADENIR LQKEIQELKT
201: LKLTQPFYMH MPASTLTKCP SCERIGGGGG GNGGGGGGSG ATAVIVDGST AKGAFSISSK PHFFNPFTNP SAAC

Arabidopsis Description

HAT9HAT9 [Source:UniProtKB/TrEMBL;Acc:A0A178VZE8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.