Factsheet for Solyc08g078300.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067540	Potato	nucleus	96.79	98.55
Solyc08g007270.2.1	Tomato	nucleus	70.36	71.64
Solyc06g060830.2.1	Tomato	nucleus	66.43	62.42
GSMUA_Achr11P...	Banana	nucleus	53.21	60.32
GSMUA_Achr7P06950_001	Banana	nucleus	38.93	60.22
GSMUA_Achr5P13530_001	Banana	nucleus	59.64	59.86
GSMUA_Achr4P21600_001	Banana	nucleus	56.43	57.04
GSMUA_Achr2P10040_001	Banana	nucleus	58.93	56.51
GSMUA_Achr1P01670_001	Banana	nucleus	58.93	55.56
Zm00001d002754_P001	Maize	nucleus	45.0	55.51
Solyc01g090460.2.1	Tomato	nucleus	56.07	54.9
HORVU2Hr1G097940.2	Barley	nucleus	43.57	54.22
EES12613	Sorghum	nucleus	45.0	54.08
TraesCS2A01G415900.1	Wheat	nucleus	43.57	53.74
TraesCS2D01G412900.1	Wheat	nucleus	43.57	53.04
TraesCS2B01G434900.1	Wheat	nucleus	43.57	53.04
GSMUA_Achr1P04360_001	Banana	nucleus	57.14	52.98
Os04t0548700-01	Rice	nucleus	44.64	50.61
Solyc02g063520.2.1	Tomato	nucleus	39.64	44.05
Solyc05g008050.1.1	Tomato	nucleus	32.5	43.54
TraesCS1D01G220900.1	Wheat	nucleus	50.0	42.94
Solyc02g091930.2.1	Tomato	nucleus	41.07	42.91
GSMUA_AchrUn_...	Banana	plastid	47.5	42.63
TraesCS1B01G232700.2	Wheat	nucleus	49.29	42.2
TraesCS1A01G219200.1	Wheat	nucleus	49.29	41.95
Os10t0561800-01	Rice	nucleus	46.43	41.8
Zm00001d029934_P001	Maize	nucleus	47.14	41.12
EER94486	Sorghum	nucleus	48.57	39.31
Solyc04g077220.2.1	Tomato	nucleus	36.43	38.64
HORVU1Hr1G055930.1	Barley	nucleus	49.29	38.23
Solyc07g054380.1.1	Tomato	nucleus	27.5	37.2
Solyc01g073910.2.1	Tomato	nucleus	47.5	36.44
Solyc10g080540.1.1	Tomato	nucleus	44.64	35.31

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HD-ZIP_N	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom
InterPro:IPR001356	UniProt:K4CNI9	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	PFAM:PF04618
PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF210	SMART:SM00340
SMART:SM00389	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc08g078300.2	EnsemblPlants:Solyc08g078300.2.1	UniParc:UPI000276CABB	SEG:seg

Description

No Description!

Coordinates

chr8:-:62101579..62103933

Molecular Weight (calculated)

31726.4 Da

IEP (calculated)

8.047

GRAVY (calculated)

-0.947

Length

280 amino acids

Sequence
(BLAST)

001: MMVEKEDLGL SLSLSFPDNN NNNKKKNTQL NLSPFNLIQK TSWTDSLFPS SDRNIETCRV ETRTFLKGID VNRLPATGDA DEEAGVSSPN STISSVSGNK
101: RSEREANNCD QEEHEMERGG SDEEDGETSR KKLRLSKDQS AILEESFKEH NTLNPKQKLA LAKRLGLRPR QVEVWFQNRR ARTKLKQTEV DCEFLKRCCE
201: NLTEENRRLQ KEVQELRALK LSPQFYMQMT PPTTLTMCPS CERVAGPPPS SSGPTSTPMG QAQPRPMPFN LWANALHPRS

Best Arabidopsis Sequence Match ( AT4G16780.1 )
(BLAST)

001: MMFEKDDLGL SLGLNFPKKQ INLKSNPSVS VTPSSSSFGL FRRSSWNESF TSSVPNSDSS QKETRTFIRG IDVNRPPSTA EYGDEDAGVS SPNSTVSSST
101: GKRSEREEDT DPQGSRGISD DEDGDNSRKK LRLSKDQSAI LEETFKDHST LNPKQKQALA KQLGLRARQV EVWFQNRRAR TKLKQTEVDC EFLRRCCENL
201: TEENRRLQKE VTELRALKLS PQFYMHMSPP TTLTMCPSCE HVSVPPPQPQ AATSAHHRSL PVNAWAPATR ISHGLTFDAL RPRS

Arabidopsis Description

HAT4Homeobox-leucine zipper protein HAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q05466]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.