Factsheet for Solyc01g073910.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g090460.2.1
Solyc02g063520.2.1
Solyc02g091930.2.1
Solyc03g121820.2.1
Solyc05g016410.2.1
Solyc06g062790.2.1
Solyc07g040720.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06710.1	Solyc01g090460.2.1	AT3G60390.1	21798944
AT5G06710.1	Solyc03g121820.2.1	AT4G26100.1	21798944
AT5G06710.1	Solyc05g016410.2.1	AT4G26100.1	21798944
AT5G06710.1	Solyc06g062790.2.1	AT4G26100.1	21798944
AT5G06710.1	Solyc07g040720.2.1	AT4G26100.1	21798944
AT5G06710.1	Solyc02g063520.2.1	AT4G37790.1	21798944
AT5G06710.1	Solyc02g091930.2.1	AT4G37790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016146	Potato	nucleus	95.89	93.83
Os09t0447000-00	Rice	nucleus	22.47	91.11
GSMUA_Achr3P07740_001	Banana	nucleus	31.78	59.79
VIT_13s0156g00260.t01	Wine grape	nucleus	55.89	56.98
KRH43419	Soybean	nucleus	53.97	52.25
GSMUA_Achr7P02380_001	Banana	nucleus	40.27	51.04
KRH13873	Soybean	nucleus	53.7	51.04
CDX81016	Canola	nucleus	34.52	48.46
Zm00001d020670_P001	Maize	nucleus	43.84	48.05
Solyc08g078300.2.1	Tomato	nucleus	36.44	47.5
Solyc02g091930.2.1	Tomato	nucleus	34.79	47.39
Solyc02g063520.2.1	Tomato	nucleus	32.6	47.22
Bra005907.1-P	Field mustard	nucleus	41.64	47.2
GSMUA_Achr9P15710_001	Banana	nucleus	40.27	47.12
AT5G06710.1	Thale cress	nucleus	43.29	47.02
Solyc10g080540.1.1	Tomato	nucleus	45.48	46.89
CDY55775	Canola	nucleus	41.1	46.58
Solyc01g090460.2.1	Tomato	nucleus	36.44	46.5
Solyc05g008050.1.1	Tomato	nucleus	26.58	46.41
Solyc08g007270.2.1	Tomato	nucleus	34.52	45.82
CDX98948	Canola	nucleus	42.47	45.72
GSMUA_Achr8P22800_001	Banana	nucleus	33.15	45.66
Bra009219.1-P	Field mustard	nucleus	42.47	45.59
CDX70076	Canola	nucleus	42.47	45.59
EER98990	Sorghum	nucleus	46.03	45.53
Solyc06g060830.2.1	Tomato	nucleus	36.99	45.3
Zm00001d005875_P001	Maize	nucleus	40.0	44.92
TraesCS5D01G235300.1	Wheat	nucleus	41.64	44.84
TraesCS5B01G231300.1	Wheat	nucleus	41.92	43.1
TraesCS5A01G232700.1	Wheat	nucleus	41.37	43.02
KXG25294	Sorghum	nucleus	44.66	42.67
Solyc04g077220.2.1	Tomato	nucleus	30.41	42.05
Solyc07g054380.1.1	Tomato	nucleus	22.19	39.13
HORVU5Hr1G067010.2	Barley	nucleus	41.92	38.93
CDX78884	Canola	nucleus	26.3	38.1
Zm00001d031745_P001	Maize	plastid	44.66	36.79

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:K4AXD6
InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF514	SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc01g073910.2	EnsemblPlants:Solyc01g073910.2.1
UniParc:UPI0002761941	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:+:81245159..81247042

Molecular Weight (calculated)

39965.5 Da

IEP (calculated)

7.769

GRAVY (calculated)

-0.718

Length

365 amino acids

Sequence
(BLAST)

001: MELGLSLGDA NTSSSPKSFF LSKKTVISTC NDHEKKKNLG FCMALGINSS SERVQQDIED EENNTSEEGT NNTLPVQLDL LPLVPLPNPP TNLPQSHHWS
101: SDNGSSENGS SGNGGLPAAR GFDVNRLPAA GMDEVSSPNS VASSFRMDFG LFKSCVNIVG VGNKRNSESA GGEPERASSR ASDDDENGAN TRKKLRLSKE
201: QSAYLEESFK EHHTLNPKQK LALAKQLSLR PRQVEVWFQN RRARTKLKQT EVDCEYLKRC CETLTDENRR LHKELQELRA LKTSNPFYMQ LPATTLTMCP
301: SCERVASTTT TTSAATAPPI TATTATTTTS DSIPKAIPFL NSRPRFFPFT ATNNNPNHSH QSAAS

Best Arabidopsis Sequence Match ( AT5G06710.1 )
(BLAST)

001: MELALSLGDN TKKQFSFMEK NSKINNPSVS STSTSEKDLG FCMALDVAFG GHRSLSSSSS PSVEDEKKKP APRAKKSDEF RVSSSVDPPL QLQLHFPNWL
101: PENSKGRQGG RMPLGAATVV EEEEEEEEAV PSMSVSPPDS VTSSFQLDFG IKSYGYERRS NKRDIDDEVE RSASRASNED NDDENGSTRK KLRLSKDQSA
201: FLEDSFKEHS TLNPKQKIAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCES LTEENRRLQK EVKELRTLKT STPFYMQLPA TTLTMCPSCE
301: RVATSAAQPS TSAAHNLCLS TSSLIPVKPR PAKQVS

Arabidopsis Description

HAT14Homeobox-leucine zipper protein HAT14 [Source:UniProtKB/Swiss-Prot;Acc:P46665]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.