Factsheet for PGSC0003DMT400016146

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006625
PGSC0003DMT400012385
PGSC0003DMT400026968
PGSC0003DMT400055199
PGSC0003DMT400066838
PGSC0003DMT400082747

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06710.1	PGSC0003DMT400066838	AT3G60390.1	21798944
AT5G06710.1	PGSC0003DMT400006625	AT4G26100.1	21798944
AT5G06710.1	PGSC0003DMT400012385	AT4G26100.1	21798944
AT5G06710.1	PGSC0003DMT400082747	AT4G26100.1	21798944
AT5G06710.1	PGSC0003DMT400026968	AT4G37790.1	21798944
AT5G06710.1	PGSC0003DMT400055199	AT4G37790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g073910.2.1	Tomato	nucleus	93.83	95.89
Os09t0447000-00	Rice	nucleus	21.98	91.11
GSMUA_Achr3P07740_001	Banana	nucleus	31.37	60.31
VIT_13s0156g00260.t01	Wine grape	nucleus	54.96	57.26
KRH43419	Soybean	nucleus	53.35	52.79
GSMUA_Achr7P02380_001	Banana	nucleus	39.95	51.74
KRH13873	Soybean	nucleus	53.08	51.56
CDX81016	Canola	nucleus	34.05	48.85
PGSC0003DMT400026968	Potato	nucleus	33.24	48.82
Zm00001d020670_P001	Maize	nucleus	43.43	48.65
PGSC0003DMT400067540	Potato	nucleus	35.66	48.36
Bra005907.1-P	Field mustard	nucleus	41.02	47.52
GSMUA_Achr9P15710_001	Banana	nucleus	39.68	47.44
PGSC0003DMT400055199	Potato	nucleus	33.78	47.37
AT5G06710.1	Thale cress	nucleus	42.63	47.32
CDY55775	Canola	nucleus	40.48	46.89
PGSC0003DMT400060951	Potato	nucleus	43.97	46.72
EER98990	Sorghum	nucleus	45.58	46.07
CDX98948	Canola	nucleus	41.82	46.02
CDX70076	Canola	nucleus	41.82	45.88
Bra009219.1-P	Field mustard	nucleus	41.82	45.88
PGSC0003DMT400066838	Potato	nucleus	35.39	45.83
GSMUA_Achr8P22800_001	Banana	nucleus	32.44	45.66
TraesCS5D01G235300.1	Wheat	nucleus	41.29	45.43
PGSC0003DMT400032546	Potato	nucleus	34.05	45.36
Zm00001d005875_P001	Maize	nucleus	39.41	45.23
PGSC0003DMT400078329	Potato	nucleus	26.01	45.12
PGSC0003DMT400062081	Potato	nucleus	36.19	44.26
TraesCS5B01G231300.1	Wheat	nucleus	41.55	43.66
TraesCS5A01G232700.1	Wheat	nucleus	40.75	43.3
KXG25294	Sorghum	nucleus	44.24	43.19
PGSC0003DMT400012615	Potato	nucleus	30.56	42.86
PGSC0003DMT400096970	Potato	nucleus	21.45	40.4
HORVU5Hr1G067010.2	Barley	nucleus	41.55	39.44
CDX78884	Canola	nucleus	26.01	38.49
Zm00001d031745_P001	Maize	plastid	43.7	36.79

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102598883	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:Leu_zip_homeo	UniProt:M1A765	PFAM:PF00046	PFAM:PF02183	EnsemblPlantsGene:PGSC0003DMG400006311	PGSC:PGSC0003DMG400006311
EnsemblPlants:PGSC0003DMT400016146	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF514	SMART:SM00340
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI00029674AF	RefSeq:XP_006359162.1	SEG:seg	:

Description

Homeobox-leucine zipper protein HAT14 [Source:PGSC_GENE;Acc:PGSC0003DMG400006311]

Coordinates

chr1:-:66698104..66700398

Molecular Weight (calculated)

40846.6 Da

IEP (calculated)

7.420

GRAVY (calculated)

-0.702

Length

373 amino acids

Sequence
(BLAST)

001: MELGLSLGDA KTNNTTNSSP KSFFLCKKNV ISTCNDHEKK KSLGFCMALG INSSSERVEQ DEDDEENNTS EEGTNNTLPV QLDLLPLVPV PLPPTNNLPQ
101: SLHWSSDNGS SENVSSGNGG LPAARGFDVN RLPAAGMDEV SSPNSVASSF RMDFGLFKSC VNIIGVGNKR NSESAGGEPE RASSRASDDD ENGANTRKKL
201: RLSKEQSAYL EESFKEHHTL NPKQKLALAK QLSLRPRQVE VWFQNRRART KLKQTEVDCE YLKRCCETLT DENRRLHKEL QELRALKTSN PFYMQLPATT
301: LTMCPSCERV ASTTTTTSAA TAPPITAATA TATTTTTSDS IPKAIPFLNS RPRFFPFTTT NNNPNHSHQS AAS

Best Arabidopsis Sequence Match ( AT5G06710.1 )
(BLAST)

001: MELALSLGDN TKKQFSFMEK NSKINNPSVS STSTSEKDLG FCMALDVAFG GHRSLSSSSS PSVEDEKKKP APRAKKSDEF RVSSSVDPPL QLQLHFPNWL
101: PENSKGRQGG RMPLGAATVV EEEEEEEEAV PSMSVSPPDS VTSSFQLDFG IKSYGYERRS NKRDIDDEVE RSASRASNED NDDENGSTRK KLRLSKDQSA
201: FLEDSFKEHS TLNPKQKIAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCES LTEENRRLQK EVKELRTLKT STPFYMQLPA TTLTMCPSCE
301: RVATSAAQPS TSAAHNLCLS TSSLIPVKPR PAKQVS

Arabidopsis Description

HAT14Homeobox-leucine zipper protein HAT14 [Source:UniProtKB/Swiss-Prot;Acc:P46665]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.