Factsheet for VIT_13s0156g00260.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0732g00010.t01
VIT_09s0002g01740.t01
VIT_11s0016g01950.t01
VIT_15s0021g01880.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06710.1	VIT_09s0002g01740.t01	AT4G26100.1	21798944
AT5G06710.1	VIT_11s0016g01950.t01	AT4G26100.1	21798944
AT5G06710.1	VIT_00s0732g00010.t01	AT4G37790.1	21798944
AT5G06710.1	VIT_15s0021g01880.t01	AT5G47370.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0447000-00	Rice	nucleus	23.74	94.44
VIT_08s0007g06670.t01	Wine grape	nucleus	59.22	64.05
GSMUA_Achr3P07740_001	Banana	nucleus	34.36	63.4
Solyc01g073910.2.1	Tomato	nucleus	56.98	55.89
PGSC0003DMT400016146	Potato	nucleus	57.26	54.96
KRH43419	Soybean	nucleus	57.26	54.38
GSMUA_Achr7P02380_001	Banana	nucleus	43.58	54.17
KRH13873	Soybean	nucleus	57.82	53.91
Zm00001d020670_P001	Maize	nucleus	49.16	52.85
GSMUA_Achr9P15710_001	Banana	nucleus	45.53	52.24
CDX81016	Canola	nucleus	37.43	51.54
VIT_00s0299g00100.t01	Wine grape	nucleus	42.74	51.52
VIT_15s0021g01880.t01	Wine grape	nucleus	40.22	50.53
TraesCS5D01G235300.1	Wheat	nucleus	47.21	49.85
VIT_00s0732g00010.t01	Wine grape	nucleus	39.11	49.47
AT5G06710.1	Thale cress	nucleus	46.09	49.11
EER98990	Sorghum	nucleus	50.0	48.51
Bra005907.1-P	Field mustard	nucleus	43.58	48.45
CDX98948	Canola	nucleus	45.81	48.38
GSMUA_Achr8P22800_001	Banana	nucleus	35.75	48.3
CDX70076	Canola	nucleus	45.81	48.24
Bra009219.1-P	Field mustard	nucleus	45.81	48.24
TraesCS5A01G232700.1	Wheat	nucleus	47.21	48.15
Zm00001d005875_P001	Maize	nucleus	43.58	48.0
TraesCS5B01G231300.1	Wheat	nucleus	47.21	47.61
VIT_18s0001g08410.t01	Wine grape	nucleus	35.75	47.41
CDY55775	Canola	nucleus	42.46	47.2
VIT_01s0011g04870.t01	Wine grape	nucleus	28.49	45.33
KXG25294	Sorghum	nucleus	47.49	44.5
HORVU5Hr1G067010.2	Barley	nucleus	46.65	42.49
CDX78884	Canola	nucleus	29.33	41.67
Zm00001d031745_P001	Maize	plastid	46.65	37.7

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100256230	wikigene:100256230	MapMan:15.5.3.1	ProteinID:CCB56690	ProteinID:CCB56690.1
ncoils:Coil	UniProt:F6HPT4	EMBL:FN596003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HD-ZIP_N	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
EntrezGene:LOC100256230	wikigene:LOC100256230	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	PFAM:PF04618
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF105	SMART:SM00340	SMART:SM00389
SUPFAM:SSF46689	UniParc:UPI0001984990	ArrayExpress:VIT_13s0156g00260	EnsemblPlantsGene:VIT_13s0156g00260	EnsemblPlants:VIT_13s0156g00260.t01	RefSeq:XP_002268178
RefSeq:XP_002268178.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:+:24027414..24029122

Molecular Weight (calculated)

38972.9 Da

IEP (calculated)

4.790

GRAVY (calculated)

-0.796

Length

358 amino acids

Sequence
(BLAST)

001: MELELSLGDA SSKPFAFMEK AHRQVANKGL GFSMGLGLGS AGRDQEEQKI HEVADDDDDD DDGEDDDDGR DQRPSMGLPL QLDLLPLAPV PRNQASHQGL
101: TWPSDNGSSE AGSSGNVGLP ARGLDVNRLP STAVTAAAGE EVEDGAAAEV ESSPNSAASS FQMDFCIYRG GNGGTKRDFE SGEAERTSSR ASDEDDNGLT
201: RKKLRLSKEQ SAFLEESFKE HNTLNPKQKL ALAKQLNLRP RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ETLTEENRRL HKELQELRAL KTSNPFYMQL
301: PATTLTMCPS CERVAATSTA PSAAASTATT ATDPSTTTTT TANRPRFYPF SHQPPGAS

Best Arabidopsis Sequence Match ( AT5G06710.1 )
(BLAST)

001: MELALSLGDN TKKQFSFMEK NSKINNPSVS STSTSEKDLG FCMALDVAFG GHRSLSSSSS PSVEDEKKKP APRAKKSDEF RVSSSVDPPL QLQLHFPNWL
101: PENSKGRQGG RMPLGAATVV EEEEEEEEAV PSMSVSPPDS VTSSFQLDFG IKSYGYERRS NKRDIDDEVE RSASRASNED NDDENGSTRK KLRLSKDQSA
201: FLEDSFKEHS TLNPKQKIAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCES LTEENRRLQK EVKELRTLKT STPFYMQLPA TTLTMCPSCE
301: RVATSAAQPS TSAAHNLCLS TSSLIPVKPR PAKQVS

Arabidopsis Description

HAT14Homeobox-leucine zipper protein HAT14 [Source:UniProtKB/Swiss-Prot;Acc:P46665]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.