CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69330
CDX71814
CDX77762
CDX82685
CDX94377
CDY25971
CDY41046
CDY41168
CDY60301
CDY64220
CDY64679
CDY67919
CDY69293

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06710.1	CDX71814	AT3G60390.1	21798944
AT5G06710.1	CDY41168	AT3G60390.1	21798944
AT5G06710.1	CDX82685	AT4G26100.1	21798944
AT5G06710.1	CDX94377	AT4G26100.1	21798944
AT5G06710.1	CDY69293	AT4G26100.1	21798944
AT5G06710.1	CDX69330	AT4G37790.1	21798944
AT5G06710.1	CDY60301	AT4G37790.1	21798944
AT5G06710.1	CDY64220	AT4G37790.1	21798944
AT5G06710.1	CDY67919	AT4G37790.1	21798944
AT5G06710.1	CDX77762	AT5G47370.1	21798944
AT5G06710.1	CDY25971	AT5G47370.1	21798944
AT5G06710.1	CDY41046	AT5G47370.1	21798944
AT5G06710.1	CDY64679	AT5G47370.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009219.1-P	Field mustard	nucleus	100.0	100.0
CDX98948	Canola	nucleus	95.88	96.17
CDX78884	Canola	nucleus	68.82	92.86
Os09t0447000-00	Rice	nucleus	24.12	91.11
CDX81016	Canola	nucleus	66.76	87.31
CDY55775	Canola	nucleus	80.88	85.4
AT5G06710.1	Thale cress	nucleus	83.24	84.23
GSMUA_Achr3P07740_001	Banana	nucleus	32.35	56.7
CDY41046	Canola	nucleus	30.59	55.03
KRH67080	Soybean	nucleus	44.41	52.43
KRG95402	Soybean	nucleus, plastid	44.12	51.37
CDY25971	Canola	nucleus	37.06	50.4
VIT_08s0007g06670.t01	Wine grape	nucleus	47.94	49.24
KRH38083	Soybean	nucleus	46.76	48.62
KRH71831	Soybean	plastid	46.76	48.33
CDX77762	Canola	nucleus	38.53	47.81
CDY64679	Canola	nucleus	38.53	47.46
CDY63827	Canola	nucleus	27.35	47.45
CDY40379	Canola	nucleus	27.35	47.45
CDX71814	Canola	nucleus	39.71	47.37
CDY70444	Canola	nucleus	38.24	47.27
CDY67061	Canola	nucleus	38.24	47.27
CDX74693	Canola	nucleus	40.59	46.78
CDY09626	Canola	nucleus	38.53	46.62
CDX77824	Canola	nucleus	27.35	46.5
CDX90473	Canola	nucleus	37.94	46.24
CDY41168	Canola	nucleus	40.0	46.1
VIT_13s0156g00260.t01	Wine grape	nucleus	48.24	45.81
CDY17676	Canola	nucleus	26.47	45.69
GSMUA_Achr8P22800_001	Banana	nucleus	35.29	45.28
GSMUA_Achr7P02380_001	Banana	nucleus	38.24	45.14
Solyc10g080540.1.1	Tomato	nucleus	45.88	44.07
PGSC0003DMT400060951	Potato	nucleus	45.29	43.87
Zm00001d020670_P001	Maize	nucleus	42.65	43.54
GSMUA_Achr9P15710_001	Banana	nucleus	39.71	43.27
CDY64220	Canola	nucleus	30.59	43.15
CDX69330	Canola	nucleus	35.59	42.91
KRH43419	Soybean	nucleus	47.35	42.71
Solyc01g073910.2.1	Tomato	nucleus	45.59	42.47
Zm00001d005875_P001	Maize	nucleus	40.59	42.46
CDY67919	Canola	nucleus	35.0	42.2
CDY37015	Canola	nucleus	39.71	42.06
CDY27404	Canola	nucleus	39.41	42.01
PGSC0003DMT400016146	Potato	nucleus	45.88	41.82
KRH13873	Soybean	nucleus	47.06	41.67
TraesCS5D01G235300.1	Wheat	nucleus	41.47	41.59
CDY03710	Canola	nucleus	25.0	41.46
CDX72758	Canola	nucleus	25.29	41.15
CDY60301	Canola	nucleus	32.06	40.37
TraesCS5A01G232700.1	Wheat	nucleus	41.47	40.17
TraesCS5B01G231300.1	Wheat	nucleus	41.76	40.0
EER98990	Sorghum	nucleus	42.94	39.57
CDY41083	Canola	nucleus	15.0	39.53
CDX96287	Canola	nucleus	20.88	39.23
KXG25294	Sorghum	nucleus	41.18	36.65
HORVU5Hr1G067010.2	Barley	nucleus	41.18	35.62
Zm00001d031745_P001	Maize	plastid	41.47	31.83

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	GO:A0A078BZG7	EnsemblPlants:CDX70076	ProteinID:CDX70076	ProteinID:CDX70076.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00136181001	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF105	SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI00025451C9	SEG:seg

Description

BnaA10g24250D

Coordinates

chrLK031790:+:2995671..2998075

Molecular Weight (calculated)

37974.4 Da

IEP (calculated)

8.665

GRAVY (calculated)

-0.862

Length

340 amino acids

Sequence
(BLAST)

001: MELALCLGDN TNKFSFMEKP SKTNNNPSAS STSTSYKDLG FNMGLDVLGF GGHRSLSSSS SPSMEDEKNK NKRKLAPKEI DSDGFRVSSS VDPSLQLQLH
101: FPWLPENSRQ GGRMLSGATT FPEEEEEAAL SMSVSPPDSV TSSFRLDFGI KSYGYERRNN KRGNENDEVE RSTSRASNED NDDDNGATRK KLRLSKDQSA
201: FLEDSFKEHS TLNPKQKIAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCES LTEENRRLQK EVKELRALKT SSPFCMQLPA TTLTMCPSCE
301: RVATSVSQPS STSAAHNIDL SKSSFHSPLI PVKPGPGKQV

Best Arabidopsis Sequence Match ( AT5G06710.1 )
(BLAST)

001: MELALSLGDN TKKQFSFMEK NSKINNPSVS STSTSEKDLG FCMALDVAFG GHRSLSSSSS PSVEDEKKKP APRAKKSDEF RVSSSVDPPL QLQLHFPNWL
101: PENSKGRQGG RMPLGAATVV EEEEEEEEAV PSMSVSPPDS VTSSFQLDFG IKSYGYERRS NKRDIDDEVE RSASRASNED NDDENGSTRK KLRLSKDQSA
201: FLEDSFKEHS TLNPKQKIAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCES LTEENRRLQK EVKELRTLKT STPFYMQLPA TTLTMCPSCE
301: RVATSAAQPS TSAAHNLCLS TSSLIPVKPR PAKQVS

Arabidopsis Description

HAT14Homeobox-leucine zipper protein HAT14 [Source:UniProtKB/Swiss-Prot;Acc:P46665]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.