CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69330
CDX71814
CDX77762
CDX82685
CDX94377
CDY25971
CDY41046
CDY41168
CDY60301
CDY64220
CDY64679
CDY67919
CDY69293

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06710.1	CDX71814	AT3G60390.1	21798944
AT5G06710.1	CDY41168	AT3G60390.1	21798944
AT5G06710.1	CDX82685	AT4G26100.1	21798944
AT5G06710.1	CDX94377	AT4G26100.1	21798944
AT5G06710.1	CDY69293	AT4G26100.1	21798944
AT5G06710.1	CDX69330	AT4G37790.1	21798944
AT5G06710.1	CDY60301	AT4G37790.1	21798944
AT5G06710.1	CDY64220	AT4G37790.1	21798944
AT5G06710.1	CDY67919	AT4G37790.1	21798944
AT5G06710.1	CDX77762	AT5G47370.1	21798944
AT5G06710.1	CDY25971	AT5G47370.1	21798944
AT5G06710.1	CDY41046	AT5G47370.1	21798944
AT5G06710.1	CDY64679	AT5G47370.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX81016	Canola	nucleus	77.33	95.77
Bra005907.1-P	Field mustard	nucleus	95.65	95.65
Os09t0447000-00	Rice	nucleus	23.91	85.56
CDX98948	Canola	nucleus	85.71	81.42
CDX70076	Canola	nucleus	85.4	80.88
AT5G06710.1	Thale cress	nucleus	81.06	77.68
CDX78884	Canola	nucleus	59.94	76.59
GSMUA_Achr3P07740_001	Banana	nucleus	32.61	54.12
CDY41046	Canola	nucleus	31.68	53.97
KRH67080	Soybean	nucleus	44.1	49.31
CDY25971	Canola	nucleus	37.27	48.0
KRG95402	Soybean	nucleus, plastid	43.48	47.95
CDX77762	Canola	nucleus	39.13	45.99
CDY64679	Canola	nucleus	39.13	45.65
VIT_08s0007g06670.t01	Wine grape	nucleus	46.89	45.62
KRH71831	Soybean	plastid	46.58	45.59
KRH38083	Soybean	nucleus	46.27	45.57
CDY63827	Canola	nucleus	27.64	45.41
CDY40379	Canola	nucleus	27.64	45.41
CDX77824	Canola	nucleus	27.64	44.5
CDY70444	Canola	nucleus	37.89	44.36
CDY67061	Canola	nucleus	37.89	44.36
CDX71814	Canola	nucleus	39.13	44.21
CDY64220	Canola	nucleus	32.92	43.98
CDY09626	Canola	nucleus	38.2	43.77
GSMUA_Achr7P02380_001	Banana	nucleus	39.13	43.75
CDX74693	Canola	nucleus	40.06	43.73
CDX90473	Canola	nucleus	37.89	43.73
CDY17676	Canola	nucleus	26.71	43.65
CDX69330	Canola	nucleus	38.2	43.62
CDY41168	Canola	nucleus	39.44	43.05
CDY67919	Canola	nucleus	37.58	42.91
VIT_13s0156g00260.t01	Wine grape	nucleus	47.2	42.46
GSMUA_Achr8P22800_001	Banana	nucleus	34.78	42.26
CDY60301	Canola	nucleus	34.47	41.11
Solyc01g073910.2.1	Tomato	nucleus	46.58	41.1
PGSC0003DMT400060951	Potato	nucleus	44.72	41.03
Solyc10g080540.1.1	Tomato	nucleus	45.03	40.96
CDX72758	Canola	nucleus	26.4	40.67
PGSC0003DMT400016146	Potato	nucleus	46.89	40.48
GSMUA_Achr9P15710_001	Banana	nucleus	39.13	40.38
Zm00001d020670_P001	Maize	nucleus	41.3	39.94
CDY37015	Canola	nucleus	39.75	39.88
Zm00001d005875_P001	Maize	nucleus	40.06	39.69
CDY27404	Canola	nucleus	39.13	39.5
CDY03710	Canola	nucleus	24.84	39.02
KRH43419	Soybean	nucleus	45.65	38.99
CDY41083	Canola	nucleus	15.53	38.76
KRH13873	Soybean	nucleus	45.03	37.76
CDX96287	Canola	nucleus	21.12	37.57
EER98990	Sorghum	nucleus	41.61	36.31
TraesCS5D01G235300.1	Wheat	nucleus	38.2	36.28
TraesCS5B01G231300.1	Wheat	nucleus	39.13	35.49
TraesCS5A01G232700.1	Wheat	nucleus	38.2	35.04
KXG25294	Sorghum	nucleus	40.06	33.77
HORVU5Hr1G067010.2	Barley	nucleus	38.2	31.3
Zm00001d031745_P001	Maize	plastid	40.68	29.57

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	GO:A0A078IVZ5	UniProt:A0A078IVZ5	EnsemblPlants:CDY55775	ProteinID:CDY55775
ProteinID:CDY55775.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EnsemblPlantsGene:GSBRNA2T00017337001	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo
PFAM:PF00046	PFAM:PF02183	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF105
SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0004EDEBFD	SEG:seg	:

Description

BnaA03g55490DBnaA03g55490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IVZ5]

Coordinates

chrLK033427:-:56719..58901

Molecular Weight (calculated)

36205.3 Da

IEP (calculated)

9.322

GRAVY (calculated)

-0.866

Length

322 amino acids

Sequence
(BLAST)

001: MEPALYLRDN TNKFSFPEKP SKIPNNPSAS STSTSDKNLG FNMGLDVLGF GSQRSLSSSL SPSVEDEKQY KSKLTQRANY SDGVRSSSSV DPSLQLQLHL
101: PWIPENRAAT VAEPSMSVSP PDSVTSSFRL DFGIKSYGYE RRNNKREMED EVEKSTSRAS NEDNDDENGA IRKKLRLSKD QSAFLEDSFN EHNTLNHKQK
201: IALAKQLNLR PRQVEVWFQN RRARTKLKQT EVDCEYLKKC CESLTDENRR LQKEVKELRA LKTSSPFYMQ RPATTLTMCP SCERVATSSS QPSTSAAHID
301: LSTSTFHSPL IPVKPGPAKQ VS

Best Arabidopsis Sequence Match ( AT5G06710.1 )
(BLAST)

001: MELALSLGDN TKKQFSFMEK NSKINNPSVS STSTSEKDLG FCMALDVAFG GHRSLSSSSS PSVEDEKKKP APRAKKSDEF RVSSSVDPPL QLQLHFPNWL
101: PENSKGRQGG RMPLGAATVV EEEEEEEEAV PSMSVSPPDS VTSSFQLDFG IKSYGYERRS NKRDIDDEVE RSASRASNED NDDENGSTRK KLRLSKDQSA
201: FLEDSFKEHS TLNPKQKIAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCES LTEENRRLQK EVKELRTLKT STPFYMQLPA TTLTMCPSCE
301: RVATSAAQPS TSAAHNLCLS TSSLIPVKPR PAKQVS

Arabidopsis Description

HAT14Homeobox-leucine zipper protein HAT14 [Source:UniProtKB/Swiss-Prot;Acc:P46665]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.