CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69330
CDX91612
CDX93236
CDX93238
CDY04768
CDY07031
CDY07638
CDY21400
CDY25761
CDY27099
CDY60301
CDY61778
CDY64220
CDY67919

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47370.1	CDY04768	AT1G22920.1	21798944
AT5G47370.1	CDY21400	AT1G22920.1	21798944
AT5G47370.1	CDY25761	AT1G22920.1	21798944
AT5G47370.1	CDX93236	AT2G39760.1	21798944
AT5G47370.1	CDX93238	AT2G39760.1	21798944
AT5G47370.1	CDY07031	AT2G39760.1	21798944
AT5G47370.1	CDY07638	AT2G39760.1	21798944
AT5G47370.1	CDY61778	AT2G39760.1	21798944
AT5G47370.1	CDX69330	AT4G37790.1	21798944
AT5G47370.1	CDY60301	AT4G37790.1	21798944
AT5G47370.1	CDY64220	AT4G37790.1	21798944
AT5G47370.1	CDY67919	AT4G37790.1	21798944
AT5G47370.1	CDX91612	AT5G51910.1	21798944
AT5G47370.1	CDY27099	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41046	Canola	nucleus	62.8	83.07
CDY64679	Canola	nucleus	89.2	80.8
CDX77762	Canola	nucleus	88.0	80.29
AT5G47370.1	Thale cress	nucleus	88.0	77.74
CDY67061	Canola	nucleus	74.8	68.0
CDY70444	Canola	nucleus	73.6	66.91
CDY09626	Canola	nucleus	75.2	66.9
CDX90473	Canola	nucleus	73.2	65.59
VIT_15s0021g01880.t01	Wine grape	nucleus	58.0	50.88
CDX71814	Canola	nucleus	55.2	48.42
CDY41168	Canola	nucleus	55.2	46.78
CDX74693	Canola	nucleus	52.4	44.41
CDY40379	Canola	nucleus	34.0	43.37
CDX81016	Canola	nucleus	44.8	43.08
CDY27404	Canola	nucleus	54.4	42.63
CDY37015	Canola	nucleus	54.4	42.37
CDY63827	Canola	nucleus	33.2	42.35
CDY17676	Canola	nucleus	33.2	42.13
CDX77824	Canola	nucleus	33.6	42.0
CDY64220	Canola	nucleus	39.2	40.66
CDY41083	Canola	nucleus	20.4	39.53
CDY03710	Canola	nucleus	32.4	39.51
CDY60301	Canola	nucleus	41.2	38.15
CDX72758	Canola	nucleus	31.2	37.32
CDY55775	Canola	nucleus	48.0	37.27
CDX70076	Canola	nucleus	50.4	37.06
CDX98948	Canola	nucleus	50.0	36.87
CDY67919	Canola	nucleus	40.4	35.82
CDX69330	Canola	nucleus	40.4	35.82
CDX96287	Canola	nucleus	25.6	35.36
CDX78884	Canola	nucleus	30.0	29.76

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	GO:A0A078GKS6	UniProt:A0A078GKS6	EnsemblPlants:CDY25971	ProteinID:CDY25971
ProteinID:CDY25971.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EnsemblPlantsGene:GSBRNA2T00033492001	InterPro:HD-ZIP_N	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	PFAM:PF04618	ScanProsite:PS00027	PFscan:PS50071
PANTHER:PTHR24326	PANTHER:PTHR24326:SF514	SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0004EB28C2
SEG:seg	:	:	:	:	:

Description

BnaC09g20160DBnaC09g20160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GKS6]

Coordinates

chrLK032183:+:446556..447979

Molecular Weight (calculated)

28168.4 Da

IEP (calculated)

8.742

GRAVY (calculated)

-0.757

Length

250 amino acids

Sequence
(BLAST)

001: MMMGKEDLGL SLSLGFSQHN NPSSSISNNL YRFPWNQTLA STSDLRKIQV NTLPSTVDCE EEAGVSSPNS TISSTISGGK RSEREGTDEE EDAGGETSRK
101: KLRLSKDQSA FLEETFKEHN TLNPKQKLAL SKKLSMTARQ VEVWFQNRRA RTKLKQTEVD CEYLKRCVEK LTEENRRLLK EAMELRTLKL SPQFYGQMTP
201: PTTLIMCPSC ERVAGPSSNH HQTHRPVAIN PWVPRAGQVA HGLDFEALRS

Best Arabidopsis Sequence Match ( AT5G47370.1 )
(BLAST)

001: MMMGKEDLGL SLSLGFSQNH NPLQMNLNPN SSLSNNLQRL PWNQTFDPTS DLRKIDVNSF PSTVNCEEDT GVSSPNSTIS STISGKRSER EGISGTGVGS
101: GDDHDEITPD RGYSRGTSDE EEDGGETSRK KLRLSKDQSA FLEETFKEHN TLNPKQKLAL AKKLNLTARQ VEVWFQNRRA RTKLKQTEVD CEYLKRCVEK
201: LTEENRRLQK EAMELRTLKL SPQFYGQMTP PTTLIMCPSC ERVGGPSSSN HHHNHRPVSI NPWVACAGQV AHGLNFEALR PRS

Arabidopsis Description

HAT2Homeobox-leucine zipper protein HAT2 [Source:UniProtKB/Swiss-Prot;Acc:P46601]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.