Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27099 | Canola | nucleus | 92.71 | 95.7 |
| Bra022568.1-P | Field mustard | cytosol | 94.1 | 91.25 |
| AT5G51910.1 | Thale cress | nucleus | 72.92 | 71.67 |
| KRG91429 | Soybean | nucleus | 49.31 | 43.56 |
| KRH35393 | Soybean | nucleus | 46.88 | 43.41 |
| CDX95656 | Canola | nucleus | 43.06 | 42.32 |
| CDX74756 | Canola | nucleus | 45.49 | 40.31 |
| CDY53888 | Canola | nucleus | 43.4 | 40.19 |
| CDY18910 | Canola | nucleus | 45.14 | 40.0 |
| Solyc03g006800.1.1 | Tomato | nucleus | 44.44 | 39.26 |
| PGSC0003DMT400062327 | Potato | nucleus | 46.53 | 36.61 |
| CDX78335 | Canola | nucleus | 21.53 | 35.23 |
| CDY40752 | Canola | cytosol | 21.53 | 35.03 |
| CDX81094 | Canola | nucleus | 21.88 | 35.0 |
| GSMUA_Achr3P12320_001 | Banana | cytosol | 23.96 | 34.16 |
| CDX87179 | Canola | nucleus | 24.31 | 32.56 |
| CDY36943 | Canola | nucleus | 21.18 | 32.28 |
| CDY16842 | Canola | nucleus | 23.96 | 32.09 |
| CDY44770 | Canola | cytosol | 24.31 | 31.11 |
| GSMUA_Achr11P... | Banana | nucleus | 23.61 | 30.09 |
| CDY40799 | Canola | nucleus | 23.96 | 30.0 |
| CDY21536 | Canola | nucleus | 24.31 | 29.66 |
| CDY46951 | Canola | nucleus | 23.61 | 29.57 |
| CDY60249 | Canola | cytosol | 21.18 | 29.33 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, plastid | 32.29 | 29.25 |
| GSMUA_Achr5P03320_001 | Banana | cytosol | 19.1 | 29.1 |
| TraesCS4A01G355900.1 | Wheat | nucleus | 29.51 | 28.72 |
| GSMUA_Achr4P27220_001 | Banana | nucleus | 21.53 | 28.18 |
| CDY45760 | Canola | nucleus | 23.61 | 28.1 |
| GSMUA_Achr8P00050_001 | Banana | cytoskeleton, cytosol, peroxisome | 31.94 | 26.82 |
| CDY48964 | Canola | nucleus | 20.49 | 26.82 |
| CDY20065 | Canola | cytosol | 25.0 | 26.77 |
| TraesCS5D01G516300.1 | Wheat | nucleus | 31.94 | 26.74 |
| TraesCS5B01G516200.1 | Wheat | cytosol, nucleus, peroxisome | 32.29 | 26.65 |
| Zm00001d031725_P001 | Maize | nucleus | 32.29 | 26.57 |
| CDX88010 | Canola | nucleus | 23.26 | 26.48 |
| OQU80770 | Sorghum | nucleus | 32.64 | 26.18 |
| CDY00171 | Canola | nucleus | 24.65 | 25.72 |
| CDY24170 | Canola | nucleus | 21.53 | 25.51 |
| Os08t0544800-01 | Rice | nucleus | 32.64 | 25.2 |
| CDY28576 | Canola | nucleus | 27.43 | 24.84 |
| HORVU5Hr1G117990.1 | Barley | cytosol, mitochondrion, nucleus | 32.29 | 24.8 |
| CDY13675 | Canola | nucleus | 26.39 | 24.44 |
| CDY68276 | Canola | nucleus, plastid | 27.08 | 24.3 |
| CDY52403 | Canola | nucleus | 25.69 | 24.26 |
| CDY01754 | Canola | nucleus, plastid | 27.08 | 24.15 |
| CDY28577 | Canola | cytosol | 20.14 | 23.87 |
| HORVU5Hr1G080210.1 | Barley | cytosol | 22.57 | 23.81 |
| CDX96370 | Canola | nucleus | 26.74 | 22.99 |
| CDX72856 | Canola | nucleus | 26.39 | 22.75 |
| TraesCS5A01G309300.1 | Wheat | cytosol, nucleus, peroxisome | 26.39 | 22.49 |
| TraesCS5D01G316300.1 | Wheat | nucleus | 26.04 | 22.46 |
| TraesCS5B01G310000.1 | Wheat | cytosol, nucleus, peroxisome | 26.04 | 22.12 |
| EER99208 | Sorghum | nucleus | 25.0 | 22.09 |
| CDY03666 | Canola | nucleus, plastid | 26.74 | 21.69 |
| CDX82193 | Canola | nucleus, plastid | 26.39 | 21.59 |
| Zm00001d006165_P001 | Maize | nucleus | 23.26 | 20.3 |
| Os09t0521300-00 | Rice | nucleus | 26.74 | 20.21 |
| CDY71135 | Canola | nucleus | 27.08 | 19.9 |
| CDY39914 | Canola | nucleus, plastid | 26.74 | 19.54 |
Protein Annotations
| EnsemblPlants:CDX91612 | EnsemblPlantsGene:GSBRNA2T00153041001 | InterPro:IPR017887 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF32 | PFAM:PF03634 | PFscan:PS51369 | ProteinID:CDX91612 | ProteinID:CDX91612.1 | SEG:seg |
| UniParc:UPI0004EAEB46 | MapMan:15.5.19 | : | : | : | : |
Description
BnaC02g15480D
Coordinates
chrLK031868:-:1011940..1012806
Molecular Weight (calculated)
31001.3 Da
IEP (calculated)
6.148
GRAVY (calculated)
-0.634
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSNLEGKEA MAHLSDPDPE TNRGMLLKEE DDDPKKQQEV GFLQPMTSSV TAPKRPSKDR HTKVEGRGRR IRMPAGCAAR IFQLTRELGH KSDGETIRWL
101: LERSEPAIIE ATGTGTIPAI AVSVNGALKI PTDSTPQFES DGGSGKRRRR NCTSEFVDIN RQDSSVTSGL APITASSYGV NLMNVNAQNF VPFWQTGFVT
201: GGPNQMGHMW AIPTVAAPSF LNGGTTRPVP SYVSNTSEAE PQMGTSGGGD DGTTQTLRDF SLETYDKKEL QFLGCSGDNT SPSSCRGT
101: LERSEPAIIE ATGTGTIPAI AVSVNGALKI PTDSTPQFES DGGSGKRRRR NCTSEFVDIN RQDSSVTSGL APITASSYGV NLMNVNAQNF VPFWQTGFVT
201: GGPNQMGHMW AIPTVAAPSF LNGGTTRPVP SYVSNTSEAE PQMGTSGGGD DGTTQTLRDF SLETYDKKEL QFLGCSGDNT SPSSCRGT
001: MESNHEGNAI QVIDQVTTMT HLSDPNPKTK PGMMLMKQED GYLQPVKTKP APKRPTSKDR HTKVEGRGRR IRMPAGCAAR VFQLTRELGH KSDGETIRWL
101: LERAEPAIIE ATGTGTVPAI AVSVNGTLKI PTSSPVLNDG GRDGDGDLIK KRRKRNCTSD FVDVNDSCHS SVTSGLAPIT ASNYGVNILN VNTQGFVPFW
201: PMGMGTAFVT GGPDQMGQMW AIPTVATAPF LNVGARPVSS YVSNASDAEA EMETSGGGTT QPLRDFSLEI YDKRELQFLG GSGNSSPSSC HET
101: LERAEPAIIE ATGTGTVPAI AVSVNGTLKI PTSSPVLNDG GRDGDGDLIK KRRKRNCTSD FVDVNDSCHS SVTSGLAPIT ASNYGVNILN VNTQGFVPFW
201: PMGMGTAFVT GGPDQMGQMW AIPTVATAPF LNVGARPVSS YVSNASDAEA EMETSGGGTT QPLRDFSLEI YDKRELQFLG GSGNSSPSSC HET
Arabidopsis Description
TCP19Transcription factor TCP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT89]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.