Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX81094 | Canola | nucleus | 94.89 | 92.78 |
| CDY40752 | Canola | cytosol | 84.09 | 83.62 |
| Bra005984.1-P | Field mustard | nucleus | 98.3 | 73.93 |
| CDY21536 | Canola | nucleus | 89.2 | 66.53 |
| CDY44770 | Canola | cytosol | 82.95 | 64.89 |
| CDX87179 | Canola | nucleus | 71.02 | 58.14 |
| CDY16842 | Canola | nucleus | 71.02 | 58.14 |
| CDY45760 | Canola | nucleus | 76.7 | 55.79 |
| CDY46951 | Canola | nucleus | 71.59 | 54.78 |
| Os03t0422702-00 | Rice | cytosol, plastid | 39.2 | 54.76 |
| CDY40799 | Canola | nucleus | 71.02 | 54.35 |
| CDX88010 | Canola | nucleus | 77.84 | 54.15 |
| Zm00001d018530_P001 | Maize | plastid | 56.82 | 48.31 |
| Os02t0828566-01 | Rice | nucleus | 60.23 | 44.92 |
| EES07800 | Sorghum | plastid | 60.8 | 44.03 |
| TraesCS6D01G397000.1 | Wheat | mitochondrion | 46.59 | 41.62 |
| TraesCS6A01G412800.1 | Wheat | mitochondrion | 46.59 | 41.41 |
| TraesCS6B01G462100.1 | Wheat | mitochondrion | 46.59 | 41.41 |
| HORVU6Hr1G093960.1 | Barley | cytosol, peroxisome | 60.23 | 39.7 |
| CDY36943 | Canola | nucleus | 38.07 | 35.45 |
| CDY24170 | Canola | nucleus | 38.07 | 27.57 |
| CDY60249 | Canola | cytosol | 30.68 | 25.96 |
| CDY48964 | Canola | nucleus | 30.68 | 24.55 |
| CDX72856 | Canola | nucleus | 44.32 | 23.35 |
| CDY20065 | Canola | cytosol | 35.23 | 23.05 |
| CDX96370 | Canola | nucleus | 43.75 | 22.99 |
| CDY27099 | Canola | nucleus | 35.8 | 22.58 |
| CDX95656 | Canola | nucleus | 37.5 | 22.53 |
| CDY00171 | Canola | nucleus | 35.23 | 22.46 |
| CDY53888 | Canola | nucleus | 38.07 | 21.54 |
| CDX91612 | Canola | nucleus | 35.23 | 21.53 |
| CDY28577 | Canola | cytosol | 29.55 | 21.4 |
| CDY28576 | Canola | nucleus | 38.64 | 21.38 |
| CDY52403 | Canola | nucleus | 36.36 | 20.98 |
| CDY68276 | Canola | nucleus, plastid | 38.07 | 20.87 |
| CDY03666 | Canola | nucleus, plastid | 42.05 | 20.85 |
| CDY01754 | Canola | nucleus, plastid | 38.07 | 20.74 |
| CDX82193 | Canola | nucleus, plastid | 41.48 | 20.74 |
| CDY13675 | Canola | nucleus | 36.36 | 20.58 |
| CDX74756 | Canola | nucleus | 36.93 | 20.0 |
| CDY18910 | Canola | nucleus | 36.36 | 19.69 |
| CDY71135 | Canola | nucleus | 40.91 | 18.37 |
| CDY39914 | Canola | nucleus, plastid | 40.91 | 18.27 |
Protein Annotations
| EnsemblPlants:CDX78335 | EnsemblPlantsGene:GSBRNA2T00129692001 | InterPro:IPR017887 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF73 | PFAM:PF03634 | PFscan:PS51369 | ProteinID:CDX78335 | ProteinID:CDX78335.1 | SEG:seg |
| UniParc:UPI0004EE1396 | MapMan:15.5.19 | MapMan:27.1.5.3 | : | : | : |
Description
BnaA03g02470D
Coordinates
chrLK031815:+:231226..232425
Molecular Weight (calculated)
18596.0 Da
IEP (calculated)
11.282
GRAVY (calculated)
-0.481
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSNDGSVPN GVIVEHPSVV NKGALNAVKK PPAKDRHTKV DGRGRRIRMP IICAARVFQL TRELGHKSDG QTIEWLLRQA EPSIIAATGT GTTPASFSTA
101: SLSTSSSFTL GKRGQQQAAT LFVRQQQQQQ ASAAAAMGEA SAARVGNYLP GHHLNLLASL SGGNTGSGRR EEDNPR
101: SLSTSSSFTL GKRGQQQAAT LFVRQQQQQQ ASAAAAMGEA SAARVGNYLP GHHLNLLASL SGGNTGSGRR EEDNPR
001: MADNDGAVSN GIIVEQTSNK GPLNAVKKPP SKDRHSKVDG RGRRIRMPII CAARVFQLTR ELGHKSDGQT IEWLLRQAEP SIIAATGTGT TPASFSTASL
101: STSSPFTLGK RVVRAEEGES GGGGGGGLTV GHTMGTSLMG GGGSGGFWAV PARPDFGQVW SFATGAPPEM VFAQQQQPAT LFVRHQQQQQ ASAAAAAAMG
201: EASAARVGNY LPGHHLNLLA SLSGGANGSG RREDDHEPR
101: STSSPFTLGK RVVRAEEGES GGGGGGGLTV GHTMGTSLMG GGGSGGFWAV PARPDFGQVW SFATGAPPEM VFAQQQQPAT LFVRHQQQQQ ASAAAAAAMG
201: EASAARVGNY LPGHHLNLLA SLSGGANGSG RREDDHEPR
Arabidopsis Description
TCP21Transcription factor TCP21 [Source:UniProtKB/Swiss-Prot;Acc:Q9FTA2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.