CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88112
EES05709
EES05730
EES06098
EES07255
EES07800
EES08974
EES09292
KXG28995
KXG29128
KXG38894
OQU88892

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08330.1	EES05730	AT2G31985.1	21798944
AT5G08330.1	EER88112	AT3G47620.1	21798944
AT5G08330.1	EES07255	AT3G47620.1	21798944
AT5G08330.1	EES05709	AT4G17680.1	21798944
AT5G08330.1	KXG38894	AT4G17680.1	21798944
AT5G08330.1	EES08974	AT4G36690.1	21798944
AT5G08330.1	KXG28995	AT4G36690.1	21798944
AT5G08330.1	KXG29128	AT4G36690.1	21798944
AT5G08330.1	EES06098	AT5G07840.1	21798944
AT5G08330.1	EES07800	AT5G08330.1	21798944
AT5G08330.1	EES09292	AT5G38420.1	21798944
AT5G08330.1	OQU88892	AT5G60340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018530_P001	Maize	plastid	79.84	93.72
Os02t0828566-01	Rice	nucleus	77.37	79.66
TraesCS6D01G397000.1	Wheat	mitochondrion	58.44	72.08
TraesCS6B01G462100.1	Wheat	mitochondrion	58.02	71.21
TraesCS6A01G412800.1	Wheat	mitochondrion	57.61	70.71
HORVU6Hr1G093960.1	Barley	cytosol, peroxisome	76.13	69.29
CDX81094	Canola	nucleus	45.68	61.67
CDX87179	Canola	nucleus	54.32	61.4
CDY16842	Canola	nucleus	53.91	60.93
CDX78335	Canola	nucleus	44.03	60.8
CDY40752	Canola	cytosol	44.03	60.45
Bra026506.1-P	Field mustard	cytosol, mitochondrion, nucleus	53.5	60.19
Bra029366.1-P	Field mustard	cytosol	42.39	58.52
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	57.61	57.38
VIT_10s0042g00170.t01	Wine grape	nucleus	60.08	57.25
CDY44770	Canola	cytosol	51.85	56.0
KRH36141	Soybean	nucleus	56.38	55.69
KRG89108	Soybean	nucleus, plastid	52.67	55.17
CDY46951	Canola	nucleus	51.85	54.78
Bra005984.1-P	Field mustard	nucleus	52.26	54.27
Bra028662.1-P	Field mustard	nucleus	51.03	54.15
KRH40904	Soybean	nucleus	53.09	53.97
AT5G08330.1	Thale cress	nucleus	53.09	53.97
Bra009338.1-P	Field mustard	nucleus	52.26	53.81
KRH40902	Soybean	nucleus	53.09	53.75
CDY45760	Canola	nucleus	53.09	53.31
KRG90619	Soybean	nucleus	53.09	53.31
CDY40799	Canola	nucleus	50.21	53.04
Solyc04g009180.1.1	Tomato	nucleus	57.61	52.63
CDY21536	Canola	nucleus	51.03	52.54
Bra009667.1-P	Field mustard	nucleus	53.91	52.4
Solyc01g008230.2.1	Tomato	nucleus	52.67	51.41
CDX88010	Canola	nucleus	53.5	51.38
AT5G23280.1	Thale cress	nucleus	51.85	50.4
EES11145	Sorghum	plastid	40.74	47.83
EES05476	Sorghum	plastid	42.8	46.85
EES10469	Sorghum	plastid	24.28	33.33
PGSC0003DMT400042166	Potato	cytosol	52.26	28.35
EES01992	Sorghum	nucleus	30.04	22.46
EER88112	Sorghum	nucleus	35.39	21.83
OQU80770	Sorghum	nucleus	30.86	20.89
EES07255	Sorghum	nucleus	33.74	20.6
EER99208	Sorghum	nucleus	27.57	20.55

Protein Annotations

MapMan:15.5.19	MapMan:27.1.5.3	EntrezGene:8084453	UniProt:C5XWP0	EnsemblPlants:EES07800	ProteinID:EES07800
ProteinID:EES07800.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	PFAM:PF03634
PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF7	EnsemblPlantsGene:SORBI_3004G354700	unigene:Sbi.8171	InterPro:TF_TCP_subgr
InterPro:Transcription_factor_TCP	UniParc:UPI0001A86185	RefSeq:XP_002454824.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:68220521..68225135

Molecular Weight (calculated)

24485.8 Da

IEP (calculated)

10.766

GRAVY (calculated)

-0.138

Length

243 amino acids

Sequence
(BLAST)

001: MTTRPDGSGS AAPADKQLVP VSNGNGNSGA LAVRKAPSKD RHSKVDGRGR RIRMPIICAA RVFQLTRELG HKSDGQTIEW LLRQAEPSII AATGTGTTPA
101: SFSTSSPSSL RSTSSTSPHP LSASPTAGLP HAAAPFILGK RVRGDGADAE PTVAAPAPGF WALPARADFG QLWSFAAAPE MMVAAAAAAA AAPAMAGEAS
201: AARVGNYLPV AQGNLNLLAS FSGGPAPTAA AATAGRAEEE TAR

Best Arabidopsis Sequence Match ( AT5G23280.1 )
(BLAST)

001: MSINNNNNNN NNNNDGLMIS SNGALIEQQP SVVVKKPPAK DRHSKVDGRG RRIRMPIICA ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP
101: ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP
201: LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR

Arabidopsis Description

TCP7Transcription factor TCP7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.