Factsheet for Bra029366.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46951	Canola	nucleus	92.61	70.87
CDY40799	Canola	nucleus	90.91	69.57
Bra026506.1-P	Field mustard	cytosol, mitochondrion, nucleus	79.55	64.81
Bra009667.1-P	Field mustard	nucleus	77.84	54.8
Bra028662.1-P	Field mustard	nucleus	69.32	53.28
Bra005984.1-P	Field mustard	nucleus	69.32	52.14
Bra009338.1-P	Field mustard	nucleus	69.89	52.12
TraesCS6D01G397000.1	Wheat	mitochondrion	56.25	50.25
TraesCS6B01G462100.1	Wheat	mitochondrion	56.25	50.0
TraesCS6A01G412800.1	Wheat	mitochondrion	55.68	49.49
Zm00001d018530_P001	Maize	plastid	52.27	44.44
Solyc01g008230.2.1	Tomato	nucleus	60.8	42.97
Os03t0422702-00	Rice	cytosol, plastid	30.68	42.86
Solyc04g009180.1.1	Tomato	nucleus	64.2	42.48
EES07800	Sorghum	plastid	58.52	42.39
Os02t0828566-01	Rice	nucleus	56.25	41.95
HORVU6Hr1G093960.1	Barley	cytosol, peroxisome	56.25	37.08
Bra003986.1-P	Field mustard	cytosol	34.66	24.9
Bra007875.1-P	Field mustard	cytosol	34.09	24.39
PGSC0003DMT400042166	Potato	cytosol	58.52	22.99
Bra016090.1-P	Field mustard	nucleus	42.05	20.79
Bra025528.1-P	Field mustard	nucleus	25.57	20.09
Bra008001.1-P	Field mustard	nucleus, plastid	39.77	18.72
Bra004407.1-P	Field mustard	nucleus, plastid	33.52	18.38
Bra000395.1-P	Field mustard	nucleus	31.82	18.01
Bra004929.1-P	Field mustard	nucleus	32.39	17.59
Bra025244.1-P	Field mustard	nucleus	29.55	16.94
Bra039096.1-P	Field mustard	nucleus	26.7	16.91
Bra022568.1-P	Field mustard	cytosol	27.27	16.16
Bra027886.1-P	Field mustard	nucleus, plastid	35.8	15.99
Bra018126.1-P	Field mustard	nucleus	34.66	13.09

Protein Annotations

MapMan:15.5.19	MapMan:27.1.5.3	EnsemblPlantsGene:Bra029366	EnsemblPlants:Bra029366.1	EnsemblPlants:Bra029366.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	UniProt:M4EKP9	PFAM:PF03634	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF73	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000254560E	SEG:seg

Description

AT5G23280 (E=2e-021) | TCP family transcription factor, putative

Coordinates

chrA02:-:25592614..25593144

Molecular Weight (calculated)

18602.0 Da

IEP (calculated)

8.287

GRAVY (calculated)

-0.162

Length

176 amino acids

Sequence
(BLAST)

001: MPIICAARVF QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GTGTTPASFS TTSTCTISSS SLDHKPLLGS SPFILGKRVR EGFGGAIPAG FWSVPARPEF
101: GQVLSFAAGA PHEMFLQQHQ QQEAAALFVH QQRQQQGAIG EASAARVGNN LPGHLSLLAS LSGGVPASGR REDDTR

Best Arabidopsis Sequence Match ( AT5G23280.1 )
(BLAST)

001: MSINNNNNNN NNNNDGLMIS SNGALIEQQP SVVVKKPPAK DRHSKVDGRG RRIRMPIICA ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP
101: ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP
201: LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR

Arabidopsis Description

TCP7Transcription factor TCP7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.