Factsheet for Bra009338.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005984.1-P	Field mustard	nucleus	89.41	90.17
Bra028662.1-P	Field mustard	nucleus	82.63	85.15
Bra026506.1-P	Field mustard	cytosol, mitochondrion, nucleus	66.53	72.69
Bra029366.1-P	Field mustard	cytosol	52.12	69.89
CDY45760	Canola	nucleus	67.37	65.7
AT5G23280.1	Thale cress	nucleus	68.22	64.4
Bra009667.1-P	Field mustard	nucleus	68.22	64.4
Os03t0422702-00	Rice	cytosol, plastid	32.2	60.32
VIT_10s0042g00170.t01	Wine grape	nucleus	63.98	59.22
Zm00001d018530_P001	Maize	plastid	49.58	56.52
Os02t0828566-01	Rice	nucleus	54.24	54.24
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	55.93	54.1
TraesCS6B01G462100.1	Wheat	mitochondrion	44.07	52.53
TraesCS6D01G397000.1	Wheat	mitochondrion	43.64	52.28
EES07800	Sorghum	plastid	53.81	52.26
TraesCS6A01G412800.1	Wheat	mitochondrion	43.64	52.02
HORVU6Hr1G093960.1	Barley	cytosol, peroxisome	54.24	47.94
Bra025528.1-P	Field mustard	nucleus	26.27	27.68
Bra016090.1-P	Field mustard	nucleus	40.68	26.97
Bra000395.1-P	Field mustard	nucleus	33.47	25.4
Bra003986.1-P	Field mustard	cytosol	26.27	25.31
Bra007875.1-P	Field mustard	cytosol	26.27	25.2
Bra008001.1-P	Field mustard	nucleus, plastid	38.56	24.33
Bra039096.1-P	Field mustard	nucleus	28.39	24.1
Bra004407.1-P	Field mustard	nucleus, plastid	32.63	23.99
Bra022568.1-P	Field mustard	cytosol	30.08	23.91
Bra004929.1-P	Field mustard	nucleus	32.63	23.77
Bra025244.1-P	Field mustard	nucleus	30.51	23.45
Bra027886.1-P	Field mustard	nucleus, plastid	34.32	20.56
Bra018126.1-P	Field mustard	nucleus	35.59	18.03

Protein Annotations

MapMan:15.5.19	MapMan:27.1.5.3	EnsemblPlantsGene:Bra009338	EnsemblPlants:Bra009338.1	EnsemblPlants:Bra009338.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	UniProt:M4CYP1	PFAM:PF03634	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF73	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0002543D55	SEG:seg

Description

AT5G08330 (E=1e-074) | TCP family transcription factor, putative

Coordinates

chrA10:+:16245734..16246444

Molecular Weight (calculated)

24734.9 Da

IEP (calculated)

9.266

GRAVY (calculated)

-0.484

Length

236 amino acids

Sequence
(BLAST)

001: MSNDDGTVTN GAIVEHTSAA NKGTLNAVKK PPAKDRHSKV DGRGRRIRMP IICAARVFQL TRELGHKSDG QTIEWLLRQA EPSIIAATGT GTTPASFSTA
101: SLSTSSPFTL GKRVVRAEEG ESGAGGGELS VGHTMGASGG GGFWAVPARN DFGQVWSFAA GAPPEMLFTQ QQQQPATLFV RHQQQQQQEA SAAAAMGEAS
201: AARVGNYLPG HHLNLLASLS GGNTGSGRRE EEDNSR

Best Arabidopsis Sequence Match ( AT5G08330.1 )
(BLAST)

001: MADNDGAVSN GIIVEQTSNK GPLNAVKKPP SKDRHSKVDG RGRRIRMPII CAARVFQLTR ELGHKSDGQT IEWLLRQAEP SIIAATGTGT TPASFSTASL
101: STSSPFTLGK RVVRAEEGES GGGGGGGLTV GHTMGTSLMG GGGSGGFWAV PARPDFGQVW SFATGAPPEM VFAQQQQPAT LFVRHQQQQQ ASAAAAAAMG
201: EASAARVGNY LPGHHLNLLA SLSGGANGSG RREDDHEPR

Arabidopsis Description

TCP21Transcription factor TCP21 [Source:UniProtKB/Swiss-Prot;Acc:Q9FTA2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.