Factsheet for Bra025528.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48964	Canola	nucleus	95.09	96.82
AT5G41030.1	Thale cress	nucleus	54.02	49.79
TraesCS2D01G049400.1	Wheat	cytosol	15.18	38.64
KRH30615	Soybean	cytosol	25.0	35.9
TraesCS2B01G062900.1	Wheat	plastid	21.88	30.62
Zm00001d025033_P001	Maize	plastid	22.32	28.41
Os04t0194600-01	Rice	plastid	21.88	27.84
Bra026506.1-P	Field mustard	cytosol, mitochondrion, nucleus	26.34	27.31
EES10469	Sorghum	plastid	20.98	26.55
Bra025244.1-P	Field mustard	nucleus	36.16	26.38
Bra009338.1-P	Field mustard	nucleus	27.68	26.27
Bra039096.1-P	Field mustard	nucleus	32.59	26.26
Bra028662.1-P	Field mustard	nucleus	26.34	25.76
Bra005984.1-P	Field mustard	nucleus	26.79	25.64
Bra029366.1-P	Field mustard	cytosol	20.09	25.57
Bra009667.1-P	Field mustard	nucleus	26.79	24.0
Bra004407.1-P	Field mustard	nucleus, plastid	33.04	23.05
Bra003986.1-P	Field mustard	cytosol	24.11	22.04
Bra007875.1-P	Field mustard	cytosol	24.11	21.95
Bra004929.1-P	Field mustard	nucleus	29.46	20.37
Bra000395.1-P	Field mustard	nucleus	28.12	20.26
Bra022568.1-P	Field mustard	cytosol	26.34	19.87
Bra016090.1-P	Field mustard	nucleus	25.89	16.29
Bra027886.1-P	Field mustard	nucleus, plastid	28.57	16.24
Bra008001.1-P	Field mustard	nucleus, plastid	25.45	15.24
Bra018126.1-P	Field mustard	nucleus	31.7	15.24

Protein Annotations

MapMan:15.5.19	EnsemblPlantsGene:Bra025528	EnsemblPlants:Bra025528.1	EnsemblPlants:Bra025528.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR017887	UniProt:M4E9S2	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF69	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00025450C6	SEG:seg	:

Description

AT5G41030 (E=6e-053) | TCP family transcription factor, putative

Coordinates

chrA04:+:8116471..8117145

Molecular Weight (calculated)

24726.1 Da

IEP (calculated)

7.816

GRAVY (calculated)

-0.845

Length

224 amino acids

Sequence
(BLAST)

001: MDPNLLNPSE TETEVKKVLN NTVEGKRKWK QKEKKGKEGH EIQTKSRKDR HLKVEGRGGR VRLPPLCAAR IFQLTRELGH KTDGETLQWL LRHAEPSIIS
101: ATGTGIKPAT DSVSQPPPHA VDLNLDGGSR SQLANGFWEN ETGFGIVGAN PTGGGFDLNC GIGFLGFDFN GSSDMGFENN QMPQVGVLNP RIYQQIGQEH
201: AKVLQHHYHH PHEAQQENAD KQGS

Best Arabidopsis Sequence Match ( AT5G41030.1 )
(BLAST)

001: MVMEPKKNQN LPSFLNPSRQ NQDNDKKRKQ TEVKGFDIVV GEKRKKKENE EEDQEIQILY EKEKKKPNKD RHLKVEGRGR RVRLPPLCAA RIYQLTKELG
101: HKSDGETLEW LLQHAEPSIL SATVNGIKPT ESVVSQPPLT ADLMICHSVE EASRTQMEAN GLWRNETGQT IGGFDLNYGI GFDFNGVPEI GFGDNQTPGL
201: ELRLSQVGVL NPQVFQQMGK EQFRVLHHHS HEDQQQSAEE NGS

Arabidopsis Description

TCP6Transcription factor TCP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.