Factsheet for Zm00001d025033_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10469	Sorghum	plastid	82.95	82.49
TraesCS2D01G049400.1	Wheat	cytosol	39.2	78.41
TraesCS2B01G062900.1	Wheat	plastid	61.36	67.5
Os04t0194600-01	Rice	plastid	65.34	65.34
KRH19921	Soybean	plastid	39.2	37.3
KRH32533	Soybean	plastid	39.77	36.84
VIT_08s0040g01600.t01	Wine grape	nucleus, plastid	41.48	35.78
KRH30615	Soybean	cytosol	27.27	30.77
AT2G37000.1	Thale cress	nucleus, plastid	30.11	28.19
Zm00001d018530_P001	Maize	plastid	32.39	27.54
PGSC0003DMT400055541	Potato	plastid	31.25	27.36
Zm00001d025896_P001	Maize	plastid	31.82	27.05
Solyc09g008030.1.1	Tomato	plastid	30.68	26.87
Zm00001d017350_P001	Maize	plastid	31.25	25.0
Zm00001d051216_P001	Maize	plastid	30.68	24.77
CDY60249	Canola	cytosol	28.41	24.04
AT3G45150.1	Thale cress	nucleus	21.59	23.03
CDY48964	Canola	nucleus	28.41	22.73
Bra025528.1-P	Field mustard	nucleus	28.41	22.32
PGSC0003DMT400095626	Potato	plastid	29.55	18.57
AT5G41030.1	Thale cress	nucleus	25.0	18.11
Zm00001d011985_P001	Maize	nucleus	31.25	17.46
Zm00001d042305_P001	Maize	cytosol, mitochondrion, nucleus	31.25	16.98
Zm00001d031725_P001	Maize	nucleus	32.39	16.29
Zm00001d037221_P001	Maize	cytosol, nucleus, peroxisome	34.66	16.09
Zm00001d006165_P001	Maize	nucleus	30.11	16.06
Zm00001d031597_P001	Maize	cytosol, nucleus, plasma membrane, plastid	25.0	15.94
Zm00001d053020_P001	Maize	cytosol, nucleus, plastid	34.66	15.76
Zm00001d044836_P001	Maize	nucleus	31.82	15.69
Zm00001d052256_P001	Maize	cytosol, nucleus, peroxisome	34.09	15.42
Zm00001d004791_P001	Maize	mitochondrion, nucleus	17.61	15.12
Zm00001d018045_P001	Maize	cytosol, nucleus, peroxisome	33.52	14.75
Zm00001d038444_P001	Maize	nucleus	24.43	14.48
Zm00001d044344_P001	Maize	nucleus	23.86	14.14
Zm00001d023565_P001	Maize	nucleus	32.39	14.07
Zm00001d041866_P001	Maize	nucleus	32.39	13.7

Protein Annotations

EntrezGene:103641503	MapMan:15.5.19	ProteinID:AIB04490.1	ProteinID:AQK42798.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR017887	UniProt:K7TSC8	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF25	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000221CF4F	EnsemblPlantsGene:Zm00001d025033	EnsemblPlants:Zm00001d025033_P001
EnsemblPlants:Zm00001d025033_T001	SEG:seg	:	:	:	:

Description

TCP-transcription factor 40Transcription factor TCP6

Coordinates

chr10:-:100593766..100594296

Molecular Weight (calculated)

18326.7 Da

IEP (calculated)

7.788

GRAVY (calculated)

-0.070

Length

176 amino acids

Sequence
(BLAST)

001: MSSSSSDLVL YNLVPAPQTL NPPPPHVTAA PDLSISTAVA AAPEPVIRGR VRRTVGSSSA DRHAKVAGRG RRVRIPAMVA ARVFQLTREL GHRTDGETIE
101: WLLRQAEPSI IAATGTGVTT EEAPSSLVPV SSIASSVSLT PVPYYTALLM QPPPTANESP VASASVSGTV AEENNN

Best Arabidopsis Sequence Match ( AT1G58100.1 )
(BLAST)

001: MDLSDIRNNN NDTAAVATGG GARQLVDASL SIVPRSTPPE DSTLATTSST ATATTTKRST KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGHKSDGETI
101: EWLLQQAEPA IVAATGTGTI PANFSTLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHQYD EQGGGGVFAA HTSPLLGFHH QLQHHQNQNQ NQDPVETIPE
201: GENFSRKRYR SVDLSKENDD RKQNENKSLK ESETSGPTAA PMWAVAPPSR SGAGNTFWML PVPTTAGNQM ESSSNNNTAA GHRAPPMWPF VNSAGGGAGG
301: GGGAATHFMA GTGFSFPMDQ YRGSPLQLGS FLAQPQPTQN LGLSMPDSNL GMLAALNSAY SRGGNANANA EQANNAVEHQ EKQQQSDHDD DSREENSNSS
401: E

Arabidopsis Description

TCP8Transcription factor TCP8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C518]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.