Factsheet for Zm00001d041866_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004791_P001	nucleus
Zm00001d006822_P001
Zm00001d023565_P001	nucleus
Zm00001d041866_P001	nucleus
Zm00001d053020_P001	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G58100.1	Zm00001d004791_P001	AT1G58100.1	23760157
AT1G58100.1	Zm00001d023565_P001	AT1G58100.1	23760157
AT1G58100.1	Zm00001d041866_P001	AT1G58100.1	23760157
AT1G58100.1	Zm00001d053020_P001	AT1G58100.1	23760157
AT1G58100.1	Zm00001d004791_P001	AT1G58100.1	23760157
AT1G58100.1	Zm00001d023565_P001	AT1G58100.1	23760157
AT1G58100.1	Zm00001d041866_P001	AT1G58100.1	23760157
AT1G58100.1	Zm00001d053020_P001	AT1G58100.1	23760157
AT1G58100.1	Zm00001d006822_P001	AT5G60960.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023565_P001	Maize	nucleus	81.25	83.46
Os12t0173300-00	Rice	nucleus	66.35	66.03
HORVU5Hr1G035980.1	Barley	cytosol	59.38	64.83
TraesCS5A01G121800.1	Wheat	nucleus	62.98	62.53
TraesCS5B01G117100.1	Wheat	nucleus	62.26	62.11
Zm00001d053020_P001	Maize	cytosol, nucleus, plastid	45.91	49.35
KRH06094	Soybean	plastid	37.5	43.21
CDY71135	Canola	nucleus	38.22	40.56
AT1G58100.1	Thale cress	nucleus	38.7	40.15
CDY39914	Canola	nucleus, plastid	37.5	39.59
Bra027886.1-P	Field mustard	nucleus, plastid	37.26	39.34
Zm00001d025896_P001	Maize	plastid	19.23	38.65
Zm00001d018530_P001	Maize	plastid	19.23	38.65
Zm00001d004791_P001	Maize	mitochondrion, nucleus	17.31	35.12
Zm00001d051216_P001	Maize	plastid	18.27	34.86
Zm00001d017350_P001	Maize	plastid	18.27	34.55
VIT_12s0035g00690.t01	Wine grape	nucleus, plastid	36.78	33.26
Zm00001d025033_P001	Maize	plastid	13.7	32.39
Zm00001d044836_P001	Maize	nucleus	26.44	30.81
PGSC0003DMT400064164	Potato	nucleus	38.46	29.96
Solyc01g103780.2.1	Tomato	nucleus	31.97	29.89
Zm00001d037221_P001	Maize	cytosol, nucleus, peroxisome	25.72	28.23
GSMUA_Achr6P17840_001	Banana	cytosol	25.96	27.84
Zm00001d011985_P001	Maize	nucleus	20.91	27.62
Zm00001d052256_P001	Maize	cytosol, nucleus, peroxisome	25.72	27.51
Zm00001d018045_P001	Maize	cytosol, nucleus, peroxisome	26.2	27.25
Zm00001d042305_P001	Maize	cytosol, mitochondrion, nucleus	21.15	27.16
GSMUA_Achr10P...	Banana	nucleus	24.28	25.0
Zm00001d031725_P001	Maize	nucleus	20.67	24.57
Zm00001d006165_P001	Maize	nucleus	18.03	22.73
Zm00001d031597_P001	Maize	cytosol, nucleus, plasma membrane, plastid	14.66	22.1
Zm00001d038444_P001	Maize	nucleus	14.66	20.54
Zm00001d044344_P001	Maize	nucleus	14.42	20.2

Protein Annotations

EntrezGene:103650647	MapMan:15.5.19	UniProt:A0A1D6MYV8	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR017887	ProteinID:ONM33874.1	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF36
InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000221028E	EnsemblPlantsGene:Zm00001d041866	EnsemblPlants:Zm00001d041866_P001	EnsemblPlants:Zm00001d041866_T001
SEG:seg	:	:	:	:	:

Description

TCP-transcription factor 31Transcription factor TCP8

Coordinates

chr3:+:141608609..141609859

Molecular Weight (calculated)

42909.1 Da

IEP (calculated)

5.916

GRAVY (calculated)

-0.712

Length

416 amino acids

Sequence
(BLAST)

001: MDHGGGGGAP SSSNSGGAAA AGGGRGGDHH PFFYAAAAAS NSGVPQQQQQ QPSPFTGALA ITPVPEQPQP SPAAGGDKKA LVPAAPAAAG PVVAKRPSKD
101: RHTKVDGRGR RIRMPALCAA RVFQLTRELG HKSDGETIEW LLQQAEPAIL AATGTGTIPA NYSSLNISVR SGAATPARAA APFPALALHP HHHQPGPAQQ
201: HDVSAMMAGY HHHHHLLPSP QQQDPSAGGD AYTRKRYRED LFKEDDDRQD PRAPKAREQQ QAATAPPSAA MWAVAPNAAA PSGGFWMLPV SASSAEQPMC
301: TWPFSGGGTG TVQAPLQFMS RASYPSGAAG GAISDTNLGM LAALNAYNRG GSEEQQPEGE QQHGGGNMLA ALNAYNRGGS EEQQPEGEQP HGGGNDDDDE
401: DGDDSAEENN GNDSSQ

Best Arabidopsis Sequence Match ( AT1G58100.1 )
(BLAST)

001: MDLSDIRNNN NDTAAVATGG GARQLVDASL SIVPRSTPPE DSTLATTSST ATATTTKRST KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGHKSDGETI
101: EWLLQQAEPA IVAATGTGTI PANFSTLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHQYD EQGGGGVFAA HTSPLLGFHH QLQHHQNQNQ NQDPVETIPE
201: GENFSRKRYR SVDLSKENDD RKQNENKSLK ESETSGPTAA PMWAVAPPSR SGAGNTFWML PVPTTAGNQM ESSSNNNTAA GHRAPPMWPF VNSAGGGAGG
301: GGGAATHFMA GTGFSFPMDQ YRGSPLQLGS FLAQPQPTQN LGLSMPDSNL GMLAALNSAY SRGGNANANA EQANNAVEHQ EKQQQSDHDD DSREENSNSS
401: E

Arabidopsis Description

TCP8Transcription factor TCP8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C518]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.