Factsheet for Zm00001d006822_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004791_P001
Zm00001d014950_P002
Zm00001d023565_P001
Zm00001d031553_P001
Zm00001d033873_P001
Zm00001d041866_P001
Zm00001d053020_P001
Zm00001d054072_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60960.1	Zm00001d031553_P001	AT1G44920.1	21297037
AT5G60960.1	Zm00001d033873_P001	AT1G44920.1	21297037
AT5G60960.1	Zm00001d004791_P001	AT1G58100.1	21297037
AT5G60960.1	Zm00001d023565_P001	AT1G58100.1	21297037
AT5G60960.1	Zm00001d041866_P001	AT1G58100.1	21297037
AT5G60960.1	Zm00001d053020_P001	AT1G58100.1	21297037
AT5G60960.1	Zm00001d014950_P002	AT5G24680.1	21297037
AT5G60960.1	Zm00001d054072_P002	AT5G24680.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97500	Sorghum	mitochondrion	90.08	90.08
Os07t0603900-01	Rice	mitochondrion	85.33	84.98
TraesCS2A01G175500.1	Wheat	mitochondrion	81.2	81.54
TraesCS2B01G201800.1	Wheat	mitochondrion	80.58	80.91
TraesCS2D01G182800.1	Wheat	mitochondrion	80.58	80.91
HORVU2Hr1G032910.2	Barley	plastid	79.96	77.56
GSMUA_Achr2P06230_001	Banana	mitochondrion	59.71	56.34
KRH34092	Soybean	mitochondrion	47.93	45.58
KRG92684	Soybean	mitochondrion, plastid	47.11	44.79
Bra012992.1-P	Field mustard	mitochondrion	46.69	43.88
VIT_17s0000g05090.t01	Wine grape	mitochondrion	46.9	42.67
Solyc03g114920.1.1	Tomato	mitochondrion	45.66	42.34
AT5G60960.1	Thale cress	plastid	45.25	42.03
PGSC0003DMT400063323	Potato	mitochondrion	45.25	42.03
Zm00001d032934_P001	Maize	mitochondrion	22.11	21.44

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100274849	MapMan:17.7.1.3.1	EMBL:BT063932	UniProt:C0P6L3	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005739	InterPro:IPR002885
InterPro:IPR011990	ProteinID:ONM25175.1	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF831	InterPro:Pentatricopeptide_repeat	SignalP:SignalP-noTM	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0001948DF2	EnsemblPlantsGene:Zm00001d006822	EnsemblPlants:Zm00001d006822_P001	EnsemblPlants:Zm00001d006822_T001	SEG:seg	:

Description

Pentatricopeptide repeat-containing protein PNM1 mitochondrial

Coordinates

chr2:-:217284796..217286250

Molecular Weight (calculated)

53988.8 Da

IEP (calculated)

10.651

GRAVY (calculated)

-0.251

Length

484 amino acids

Sequence
(BLAST)

001: MWRRHHLLRL LPPPATAATA AAPSHFLRYL STSSTPTPAA SLASSLASAL TALSTTPPPA TTPDAYFSLH FSDVRPTNAL LAEALALSPP ATSRAAADLF
101: RFLVRRRSLH PSDGALAPIV RHLARRRDFP AVRALIQEFP TALGPTTLDA YLQQLTRAGR PTDAVKVFDE LPEQLRNREA LTLLVSSLSS EGFPSHAERA
201: AKKVASEIFP DDNICTLLVS GYANAGKLDH ALRLIGETRR GGFHPGLDAY NAVLDCVCRL CRKKDPLRMP IEAEKFLVDM EANGIPRDAG TFRVLITNFC
301: KIRKTGDAMN LFQRMGEWGC SPDADTYLVL IRSLYQAART SEGDEMITWM RSAGFGDKLD RKAYYGFIKI LCGIERVEHA VKVFRMMKGY GHAPGVKSYT
401: LLIEKLARHN LGDRSNALFR EAVARGVPVA QGEYNVDKRY VKTKKEKTVK KRLTLPEKMR LKSKRLYKLR MSFVKKPKRR MLRV

Best Arabidopsis Sequence Match ( AT5G60960.1 )
(BLAST)

001: MPPSLPSLQL RRLLLRSFIS SSSVNTLQSQ PRIISSKPLF SPLPPSRSSI FSTFPSRFFS SETNAESESL DSNEIALSFS KELTGNPDAE SQTISQRFNL
101: SFSHITPNPD LILQTLNLSP EAGRAALGFN EWLDSNSNFS HTDETVSFFV DYFGRRKDFK GMLEIISKYK GIAGGKTLES AIDRLVRAGR PKQVTDFFEK
201: MENDYGLKRD KESLTLVVKK LCEKGHASIA EKMVKNTANE IFPDENICDL LISGWCIAEK LDEATRLAGE MSRGGFEIGT KAYNMMLDCV CKLCRKKDPF
301: KLQPEVEKVL LEMEFRGVPR NTETFNVLIN NLCKIRRTEE AMTLFGRMGE WGCQPDAETY LVLIRSLYQA ARIGEGDEMI DKMKSAGYGE LLNKKEYYGF
401: LKILCGIERL EHAMSVFKSM KANGCKPGIK TYDLLMGKMC ANNQLTRANG LYKEAAKKGI AVSPKEYRVD PRFMKKKTKE VDSNVKKRET LPEKTARKKK
501: RLKQINMSFV KKPHNKMRRR M

Arabidopsis Description

PNM1PNM1 [Source:UniProtKB/TrEMBL;Acc:A0A178U8V9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.