Factsheet for Zm00001d032934_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0422300-00	Rice	mitochondrion	70.94	73.75
TraesCS3B01G419500.1	Wheat	mitochondrion	70.14	71.28
TraesCS3D01G380400.1	Wheat	mitochondrion	69.74	70.88
TraesCS3A01G389400.1	Wheat	mitochondrion	69.54	70.67
HORVU4Hr1G025220.1	Barley	cytosol, plastid	46.69	62.8
KXG38503	Sorghum	mitochondrion	84.77	62.67
HORVU3Hr1G081750.4	Barley	mitochondrion	69.14	50.81
VIT_01s0127g00660.t01	Wine grape	cytosol	40.08	44.25
GSMUA_Achr4P18270_001	Banana	mitochondrion	38.88	43.6
AT5G61370.1	Thale cress	mitochondrion	39.28	40.25
KRH03514	Soybean	mitochondrion	39.28	40.0
Bra012965.1-P	Field mustard	mitochondrion	38.68	39.96
KRH56887	Soybean	mitochondrion	36.07	39.74
CDY02152	Canola	mitochondrion	38.28	39.54
CDY68950	Canola	mitochondrion	38.08	39.34
Zm00001d006822_P001	Maize	mitochondrion	21.44	22.11

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100304347	MapMan:35.1	EMBL:BT060911	EMBL:BT061873	UniProt:C0HF05
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	InterPro:IPR002885	InterPro:IPR011990	ProteinID:ONM06366.1
PFAM:PF01535	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF620	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI00019485CF	EnsemblPlantsGene:Zm00001d032934	EnsemblPlants:Zm00001d032934_P001	EnsemblPlants:Zm00001d032934_T001	SEG:seg

Description

Pentatricopeptide repeat-containing protein mitochondrial

Coordinates

chr1:+:243891052..243894369

Molecular Weight (calculated)

54965.4 Da

IEP (calculated)

9.628

GRAVY (calculated)

-0.055

Length

499 amino acids

Sequence
(BLAST)

001: MNRLASTRFT AALTRSVLPQ CRRPIGRALC SGAPQNGEME AAVREVVCFG SGSLDEVGSR LDRLGVAVSP HLIGRVIDSC GETGGGSGRR LLRFLAWCRS
101: KHSGVLGEEA LDRAIGVLAR AGDLTAMRIA IADAEKDGRR MAPETFSTVI DALVKAGRED EAVRLFRGLE RQRLLPECGS RVGGHGVWSS SLAMVHALCK
201: RGHAREAQGV VWHHKSELSA EPMVSIVERS LLHGWCVHGN AKEARKVLNE MKSSGVPLGL PSFNEFLHCV CHRNLNFNPS ALVPEAMDIL TEMRTCGVPP
301: AASSFNILLS CLGRARRVKE AYRILYLMRE GKAGCSPDWV SYYLVVRVLY LTRRILRGKR LVDAMLESGV LPTAKFFHGL IGILCGTEEV DHALDMFKLM
401: KRCELVDARI YDLLIEKLCR IGRFEIGREL WDEATNSGLV LGCSQDLLDP LKTEVFRPIC PAQRLSPQNY KRLAWKKKVT AVGVKKDIAI SASRKKSGV

Best Arabidopsis Sequence Match ( AT5G61370.1 )
(BLAST)

001: MMSTTVRLNR FTYLTSTAKL TRYFCSHHLV DRSETALHEV IRIVSSPVGG LDDLEENLNQ VSVSPSSNLV TQVIESCKNE TSPRRLLRFF SWSCKSLGSS
101: LHDKEFNYVL RVLAEKKDHT AMQILLSDLR KENRAMDKQT FSIVAETLVK VGKEEDAIGI FKILDKFSCP QDGFTVTAII SALCSRGHVK RALGVMHHHK
201: DVISGNELSV YRSLLFGWSV QRNVKEARRV IQDMKSAGIT PDLFCFNSLL TCLCERNVNR NPSGLVPEAL NIMLEMRSYK IQPTSMSYNI LLSCLGRTRR
301: VRESCQILEQ MKRSGCDPDT GSYYFVVRVL YLTGRFGKGN QIVDEMIERG FRPERKFYYD LIGVLCGVER VNFALQLFEK MKRSSVGGYG QVYDLLIPKL
401: CKGGNFEKGR ELWEEALSID VTLSCSISLL DPSVTEVFKP MKMKEEAAMV DRRALNLKIH ARMNKTKPKL KLKPKRRSKT KKKNLQH

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLJ6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.