Factsheet for VIT_01s0127g00660.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03514	Soybean	mitochondrion	65.93	60.82
KRH56887	Soybean	mitochondrion	59.07	58.94
CDY02152	Canola	mitochondrion	59.73	55.9
Bra012965.1-P	Field mustard	mitochondrion	59.51	55.69
CDY68950	Canola	mitochondrion	59.51	55.69
AT5G61370.1	Thale cress	mitochondrion	59.73	55.44
Os10t0422300-00	Rice	mitochondrion	44.25	41.67
TraesCS3A01G389400.1	Wheat	mitochondrion	44.03	40.53
TraesCS3D01G380400.1	Wheat	mitochondrion	43.81	40.33
TraesCS3B01G419500.1	Wheat	mitochondrion	43.58	40.12
Zm00001d032934_P001	Maize	mitochondrion	44.25	40.08
HORVU4Hr1G025220.1	Barley	cytosol, plastid	30.53	37.2
GSMUA_Achr4P18270_001	Banana	mitochondrion	35.4	35.96
KXG38503	Sorghum	mitochondrion	43.36	29.04
HORVU3Hr1G081750.4	Barley	mitochondrion	42.48	28.28
VIT_17s0000g05090.t01	Wine grape	mitochondrion	24.56	20.86

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100853947	wikigene:100853947	MapMan:35.1	ProteinID:CBI28530	ProteinID:CBI28530.3
UniProt:D7TDF7	EMBL:FN595761	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100853947
wikigene:LOC100853947	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF620
InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00015CCAD9	ArrayExpress:VIT_01s0127g00660	EnsemblPlantsGene:VIT_01s0127g00660
EnsemblPlants:VIT_01s0127g00660.t01	unigene:Vvi.22552	RefSeq:XP_003631269	RefSeq:XP_003631269.1	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:7999869..8001227

Molecular Weight (calculated)

50998.0 Da

IEP (calculated)

9.047

GRAVY (calculated)

-0.255

Length

452 amino acids

Sequence
(BLAST)

001: MSLGPSPVLQ ELCNVVSNGV GSLDDLEASL DRLDASFTSS LISQILDTCK NEAPTRRLLR FFLWSSKKFN CKLEDDDFNY AIQVFAEKKD LKAIDILVSD
101: LSNEGREMKA QTFGIVAETL VSLGREDDAL GLFKNLDKFK CSYDSVTVTA IVNALCSKGH ARRAEGVVRH HKDKILGVKP CIYRSLFYGW SEQKNVKEAR
201: RILKEMKSVG IMPDLFCYNT FLRCLCERNL KSNPSGLVPE ALNVMMEMRS NRITPTSISY NILLSCLGRT RRVKESCRIL DLMKRLGCSP DWVSYYLVAR
301: VLYLTGRFGK GNQIVDEMIE EGLVPDRKFY YDLIGVLCGV ERVNYALEMF ERMKRSSLGG YGPVYDVLIP KLCRSGDFGK GRELWDEATR VGVLLHCSSE
401: VLDPSITKVF KPARKDEEVC TMSRTLVQEA KAVRNGNKNK KNKNKKKSAA PS

Best Arabidopsis Sequence Match ( AT5G61370.1 )
(BLAST)

001: MMSTTVRLNR FTYLTSTAKL TRYFCSHHLV DRSETALHEV IRIVSSPVGG LDDLEENLNQ VSVSPSSNLV TQVIESCKNE TSPRRLLRFF SWSCKSLGSS
101: LHDKEFNYVL RVLAEKKDHT AMQILLSDLR KENRAMDKQT FSIVAETLVK VGKEEDAIGI FKILDKFSCP QDGFTVTAII SALCSRGHVK RALGVMHHHK
201: DVISGNELSV YRSLLFGWSV QRNVKEARRV IQDMKSAGIT PDLFCFNSLL TCLCERNVNR NPSGLVPEAL NIMLEMRSYK IQPTSMSYNI LLSCLGRTRR
301: VRESCQILEQ MKRSGCDPDT GSYYFVVRVL YLTGRFGKGN QIVDEMIERG FRPERKFYYD LIGVLCGVER VNFALQLFEK MKRSSVGGYG QVYDLLIPKL
401: CKGGNFEKGR ELWEEALSID VTLSCSISLL DPSVTEVFKP MKMKEEAAMV DRRALNLKIH ARMNKTKPKL KLKPKRRSKT KKKNLQH

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLJ6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.