Factsheet for TraesCS3B01G419500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G389400.1	Wheat	mitochondrion	97.15	97.15
TraesCS3D01G380400.1	Wheat	mitochondrion	96.94	96.94
Os10t0422300-00	Rice	mitochondrion	74.13	75.83
HORVU4Hr1G025220.1	Barley	cytosol, plastid	55.4	73.32
Zm00001d032934_P001	Maize	mitochondrion	71.28	70.14
HORVU3Hr1G081750.4	Barley	mitochondrion	87.98	63.62
KXG38503	Sorghum	mitochondrion	70.06	50.96
VIT_01s0127g00660.t01	Wine grape	cytosol	40.12	43.58
GSMUA_Achr4P18270_001	Banana	mitochondrion	38.49	42.47
KRH56887	Soybean	mitochondrion	36.86	39.96
KRH03514	Soybean	mitochondrion	39.71	39.8
AT5G61370.1	Thale cress	mitochondrion	39.1	39.43
Bra012965.1-P	Field mustard	mitochondrion	38.7	39.34
CDY02152	Canola	mitochondrion	38.7	39.34
CDY68950	Canola	mitochondrion	38.29	38.92
TraesCS2B01G201800.1	Wheat	mitochondrion	21.38	21.78

Protein Annotations

EnsemblPlants:TraesCS3B01G419500.1	EnsemblPlantsGene:TraesCS3B01G419500	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	InterPro:IPR002885
InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF620	PFAM:PF01535
PFAM:PF12854	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	MapMan:35.1	:

Description

No Description!

Coordinates

chr3B:-:655861681..655863156

Molecular Weight (calculated)

54191.7 Da

IEP (calculated)

8.442

GRAVY (calculated)

-0.160

Length

491 amino acids

Sequence
(BLAST)

001: MATVMRRSVT ALSLSQSSLA PCSRLGRCQI RRAMCSGAWQ EGESEAAVRD VVCLGSGSLD EVGSRLDRLN FAISPALVRR VIDSCSERSD SGRRLLRFLS
101: WCRSKDPAGL GDEEHDRAVA VLARMGDLTA MKIAVGDGEK DGRRMAPETF TAVVEALVKA GKEDEAVRLF RGLERQKLLP QQGPGAGGEG IWCSSLAMVQ
201: TLCMKGYARE AQGVVWHHKS ELSAEPMVSI VQRSLLHGWC VHGNAKEARR VLDDIKSSGC PLGLPSFNDF LNCVCHRNLK FNPSALVPEA MDILTEMRSY
301: GVTPDSSSFN ILLSCLGRAR RVKEAYRILY LMREGEEGCS PDWVSYYLVV KVLYLTDRII RGKRLVEDML ESGVLPTAKF FHGLIGILCG TEKVDHALDM
401: FRIMKSCELV DTPTYDLLIE KLSRNGRFEV AKELWDDATK NGIVLGCSSD LLDPLKTEVF RPVRPAQRQA SQNCKSLIRT KKGTAAGAIN K

Best Arabidopsis Sequence Match ( AT5G61370.1 )
(BLAST)

001: MMSTTVRLNR FTYLTSTAKL TRYFCSHHLV DRSETALHEV IRIVSSPVGG LDDLEENLNQ VSVSPSSNLV TQVIESCKNE TSPRRLLRFF SWSCKSLGSS
101: LHDKEFNYVL RVLAEKKDHT AMQILLSDLR KENRAMDKQT FSIVAETLVK VGKEEDAIGI FKILDKFSCP QDGFTVTAII SALCSRGHVK RALGVMHHHK
201: DVISGNELSV YRSLLFGWSV QRNVKEARRV IQDMKSAGIT PDLFCFNSLL TCLCERNVNR NPSGLVPEAL NIMLEMRSYK IQPTSMSYNI LLSCLGRTRR
301: VRESCQILEQ MKRSGCDPDT GSYYFVVRVL YLTGRFGKGN QIVDEMIERG FRPERKFYYD LIGVLCGVER VNFALQLFEK MKRSSVGGYG QVYDLLIPKL
401: CKGGNFEKGR ELWEEALSID VTLSCSISLL DPSVTEVFKP MKMKEEAAMV DRRALNLKIH ARMNKTKPKL KLKPKRRSKT KKKNLQH

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLJ6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.