CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03514	Soybean	mitochondrion	86.98	80.41
VIT_01s0127g00660.t01	Wine grape	cytosol	58.94	59.07
AT5G61370.1	Thale cress	mitochondrion	54.97	51.13
CDY02152	Canola	mitochondrion	54.3	50.93
Bra012965.1-P	Field mustard	mitochondrion	54.08	50.72
CDY68950	Canola	mitochondrion	54.08	50.72
Os10t0422300-00	Rice	mitochondrion	40.62	38.33
TraesCS3A01G389400.1	Wheat	mitochondrion	40.4	37.27
TraesCS3B01G419500.1	Wheat	mitochondrion	39.96	36.86
TraesCS3D01G380400.1	Wheat	mitochondrion	39.51	36.46
Zm00001d032934_P001	Maize	mitochondrion	39.74	36.07
HORVU4Hr1G025220.1	Barley	cytosol, plastid	26.71	32.61
GSMUA_Achr4P18270_001	Banana	mitochondrion	31.13	31.69
HORVU3Hr1G081750.4	Barley	mitochondrion	39.96	26.66
KXG38503	Sorghum	mitochondrion	38.41	25.78
KRH34092	Soybean	mitochondrion	23.18	20.63
KRG92684	Soybean	mitochondrion, plastid	22.96	20.43

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A0R0JQG7	EMBL:ACUP02002800	EnsemblPlantsGene:GLYMA_05G024900	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH56887	ProteinID:KRH56887	ProteinID:KRH56887.1	PFAM:PF01535
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF620	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0006ED4DD2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:2174492..2175938

Molecular Weight (calculated)

51480.9 Da

IEP (calculated)

9.548

GRAVY (calculated)

-0.332

Length

453 amino acids

Sequence
(BLAST)

001: MHALLKPAWK RFWLQNMSTQ NFQIFPFSHY STLQPMSVHP QLQELCNIVM STVGGLDELE LSLSKFKDSL TSSLVAQAND STKHEAHTRR LLRFFLWSIK
101: NLSQNLEDKD YNHALQLFAE KKDYTAMDIL MGDLKKEGRV MDAETFGPVA ENLVKLGKED EALGIFKNLD KYKCPIDEFT VTAIVNALCS KGHAKRAGGV
201: VLHHKDKITG TKPCIYRSIL YGWCLCERNL RHNPSGLVSE ALNVIMEMRS YNVFPTSISY NILLSCLGKT RRVKESRHIL ETMKNSGCDP DWLSYYLVAK
301: VLFLSGRFGK GKEMVDQMIG KGLVPNPKFY YSLIGILCGI ERVNYALELF EKMKKSSMGG YGPVYDVLIP KLCRGGDFEK GRELWDEATD MGITLLCSED
401: VLDPSKTEVY KPTRPEKSSL VDSSRVKSPE KVTKFSGKMK MRKRTVAMKK KKN

Best Arabidopsis Sequence Match ( AT5G61370.1 )
(BLAST)

001: MMSTTVRLNR FTYLTSTAKL TRYFCSHHLV DRSETALHEV IRIVSSPVGG LDDLEENLNQ VSVSPSSNLV TQVIESCKNE TSPRRLLRFF SWSCKSLGSS
101: LHDKEFNYVL RVLAEKKDHT AMQILLSDLR KENRAMDKQT FSIVAETLVK VGKEEDAIGI FKILDKFSCP QDGFTVTAII SALCSRGHVK RALGVMHHHK
201: DVISGNELSV YRSLLFGWSV QRNVKEARRV IQDMKSAGIT PDLFCFNSLL TCLCERNVNR NPSGLVPEAL NIMLEMRSYK IQPTSMSYNI LLSCLGRTRR
301: VRESCQILEQ MKRSGCDPDT GSYYFVVRVL YLTGRFGKGN QIVDEMIERG FRPERKFYYD LIGVLCGVER VNFALQLFEK MKRSSVGGYG QVYDLLIPKL
401: CKGGNFEKGR ELWEEALSID VTLSCSISLL DPSVTEVFKP MKMKEEAAMV DRRALNLKIH ARMNKTKPKL KLKPKRRSKT KKKNLQH

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLJ6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.