Factsheet for AT5G61370.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02152	Canola	mitochondrion	77.82	78.47
Bra012965.1-P	Field mustard	mitochondrion	77.62	78.26
CDY68950	Canola	mitochondrion	77.0	77.64
VIT_01s0127g00660.t01	Wine grape	cytosol	55.44	59.73
KRH03514	Soybean	mitochondrion	57.08	56.73
KRH56887	Soybean	mitochondrion	51.13	54.97
Os10t0422300-00	Rice	mitochondrion	39.84	40.42
TraesCS3A01G389400.1	Wheat	mitochondrion	39.63	39.31
Zm00001d032934_P001	Maize	mitochondrion	40.25	39.28
TraesCS3B01G419500.1	Wheat	mitochondrion	39.43	39.1
TraesCS3D01G380400.1	Wheat	mitochondrion	39.22	38.9
HORVU4Hr1G025220.1	Barley	cytosol, plastid	27.72	36.39
GSMUA_Achr4P18270_001	Banana	mitochondrion	32.44	35.51
KXG38503	Sorghum	mitochondrion	39.01	28.15
HORVU3Hr1G081750.4	Barley	mitochondrion	38.81	27.84
AT5G60960.1	Thale cress	plastid	21.97	20.54

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:836258	ProteinID:AED97459.1	ArrayExpress:AT5G61370	EnsemblPlantsGene:AT5G61370
RefSeq:AT5G61370	TAIR:AT5G61370	RefSeq:AT5G61370-TAIR-G	EnsemblPlants:AT5G61370.1	TAIR:AT5G61370.1	EMBL:AY065266
EMBL:AY087789	EMBL:AY142659	Unigene:At.66671	ProteinID:BAB08492.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231
GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	RefSeq:NP_200945.1	PFAM:PF01535	PFAM:PF13041
PFAM:PF13812	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000293	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007057	PO:PO:0007115
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF620	InterPro:Pentatricopeptide_repeat	UniProt:Q9FLJ6	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI00000AC256	SEG:seg	:	:	:

Description

Pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLJ6]

Coordinates

chr5:-:24671770..24673657

Molecular Weight (calculated)

55551.9 Da

IEP (calculated)

9.961

GRAVY (calculated)

-0.281

Length

487 amino acids

Sequence
(BLAST)

001: MMSTTVRLNR FTYLTSTAKL TRYFCSHHLV DRSETALHEV IRIVSSPVGG LDDLEENLNQ VSVSPSSNLV TQVIESCKNE TSPRRLLRFF SWSCKSLGSS
101: LHDKEFNYVL RVLAEKKDHT AMQILLSDLR KENRAMDKQT FSIVAETLVK VGKEEDAIGI FKILDKFSCP QDGFTVTAII SALCSRGHVK RALGVMHHHK
201: DVISGNELSV YRSLLFGWSV QRNVKEARRV IQDMKSAGIT PDLFCFNSLL TCLCERNVNR NPSGLVPEAL NIMLEMRSYK IQPTSMSYNI LLSCLGRTRR
301: VRESCQILEQ MKRSGCDPDT GSYYFVVRVL YLTGRFGKGN QIVDEMIERG FRPERKFYYD LIGVLCGVER VNFALQLFEK MKRSSVGGYG QVYDLLIPKL
401: CKGGNFEKGR ELWEEALSID VTLSCSISLL DPSVTEVFKP MKMKEEAAMV DRRALNLKIH ARMNKTKPKL KLKPKRRSKT KKKNLQH

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.