Factsheet for HORVU4Hr1G025220.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G419500.1	Wheat	mitochondrion	73.32	55.4
TraesCS3D01G380400.1	Wheat	mitochondrion	73.05	55.19
TraesCS3A01G389400.1	Wheat	mitochondrion	72.78	54.99
Os10t0422300-00	Rice	mitochondrion	64.69	50.0
Zm00001d032934_P001	Maize	mitochondrion	62.8	46.69
HORVU3Hr1G081750.4	Barley	mitochondrion	74.66	40.8
KXG38503	Sorghum	mitochondrion	61.46	33.78
GSMUA_Achr4P18270_001	Banana	mitochondrion	37.2	31.01
VIT_01s0127g00660.t01	Wine grape	cytosol	37.2	30.53
AT5G61370.1	Thale cress	mitochondrion	36.39	27.72
Bra012965.1-P	Field mustard	mitochondrion	35.31	27.12
CDY02152	Canola	mitochondrion	35.31	27.12
CDY68950	Canola	mitochondrion	35.31	27.12
KRH03514	Soybean	mitochondrion	35.31	26.73
KRH56887	Soybean	mitochondrion	32.61	26.71
HORVU2Hr1G032910.2	Barley	plastid	20.49	15.23

Protein Annotations

EnsemblPlants:HORVU4Hr1G025220.1	EnsemblPlantsGene:HORVU4Hr1G025220	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR24015
PANTHER:PTHR24015:SF620	PFAM:PF01535	PFAM:PF12854	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI000B46AC9D	UniProt:A0A287NLA3	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrchr4H:+:146760726..146762064

Molecular Weight (calculated)

37403.7 Da

IEP (calculated)

8.474

GRAVY (calculated)

0.026

Length

371 amino acids

Sequence
(BLAST)

001: MPTVCVTVTV SFMSSFSDRG HXXXFTTVVE ALVKAGKEDE AVRLFRGLER QKLLPQKVSG AGGEGIWCSS LAMVQTLCMK GYAREAQGVV WHHKSELSAE
101: PMVSIVQRSL LHGWCVHGNA KEARRVLDDI KSSGCPLGLP SFNDFLNCVC HRNLKFNPSA LVSEAMDILA EMRSYGVTPD SSSFNILLSC LGRARRVKEA
201: YRILYLMREG EEGCSPDWVS YYLVVKVLYL TDRIIRGKRL VEDMLESGVL PTAKFFHGLI GILCGTEKVD HALDMFKIMK SCELVDTHTY DLLIXXXXXX
301: XXXXXXXXXX XXXXXXXXXX XXXXXXXXTV SALAERRKKN SPQPYNHRNF TVPAIIRDVV GMLLRIYYSA I

Best Arabidopsis Sequence Match ( AT5G61370.1 )
(BLAST)

001: MMSTTVRLNR FTYLTSTAKL TRYFCSHHLV DRSETALHEV IRIVSSPVGG LDDLEENLNQ VSVSPSSNLV TQVIESCKNE TSPRRLLRFF SWSCKSLGSS
101: LHDKEFNYVL RVLAEKKDHT AMQILLSDLR KENRAMDKQT FSIVAETLVK VGKEEDAIGI FKILDKFSCP QDGFTVTAII SALCSRGHVK RALGVMHHHK
201: DVISGNELSV YRSLLFGWSV QRNVKEARRV IQDMKSAGIT PDLFCFNSLL TCLCERNVNR NPSGLVPEAL NIMLEMRSYK IQPTSMSYNI LLSCLGRTRR
301: VRESCQILEQ MKRSGCDPDT GSYYFVVRVL YLTGRFGKGN QIVDEMIERG FRPERKFYYD LIGVLCGVER VNFALQLFEK MKRSSVGGYG QVYDLLIPKL
401: CKGGNFEKGR ELWEEALSID VTLSCSISLL DPSVTEVFKP MKMKEEAAMV DRRALNLKIH ARMNKTKPKL KLKPKRRSKT KKKNLQH

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLJ6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.