Factsheet for GSMUA_Achr4P18270_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
extracellular 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0422300-00	Rice	mitochondrion	42.47	39.38
Zm00001d032934_P001	Maize	mitochondrion	43.6	38.88
TraesCS3B01G419500.1	Wheat	mitochondrion	42.47	38.49
TraesCS3A01G389400.1	Wheat	mitochondrion	42.25	38.29
TraesCS3D01G380400.1	Wheat	mitochondrion	42.02	38.09
HORVU4Hr1G025220.1	Barley	cytosol, plastid	31.01	37.2
VIT_01s0127g00660.t01	Wine grape	cytosol	35.96	35.4
Bra012965.1-P	Field mustard	mitochondrion	36.63	33.75
CDY02152	Canola	mitochondrion	36.18	33.33
CDY68950	Canola	mitochondrion	36.18	33.33
KRH03514	Soybean	mitochondrion	36.18	32.86
AT5G61370.1	Thale cress	mitochondrion	35.51	32.44
KRH56887	Soybean	mitochondrion	31.69	31.13
KXG38503	Sorghum	mitochondrion	42.7	28.15
HORVU3Hr1G081750.4	Barley	mitochondrion	42.25	27.69
GSMUA_Achr2P06230_001	Banana	mitochondrion	21.12	18.32

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	EnsemblPlantsGene:GSMUA_Achr4G18270_001	EnsemblPlants:GSMUA_Achr4P18270_001
EnsemblPlants:GSMUA_Achr4T18270_001	InterPro:IPR002885	InterPro:IPR011990	UniProt:M0SPZ0	PFAM:PF01535	PFAM:PF13812
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF620	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0002951824	SEG:seg	:	:	:	:

Description

Putative Pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr4G18270_001]

Coordinates

chr4:+:18964414..18971754

Molecular Weight (calculated)

49545.6 Da

IEP (calculated)

8.963

GRAVY (calculated)

0.009

Length

445 amino acids

Sequence
(BLAST)

001: MLALLRSSLG TMTYHDLCCF CAGGGKLPPI LATMQRLLTS RWHRFLSSST PPVDTNLRQM VLHIVASGVG SLDDMVTALD RSSIVPTPAF INEVIDACSS
101: QSGVGNSISS RRLLRFFSWC QQRQRPQERY GDDVVNRAIR AFAKMKDLTA MGIAICDLQK EGRSVALETF ALVTDTLVKA GEEEKAVRLL GSLERARLLQ
201: DHHGNDGVVG GACSGILIVV HALCARGNPG MARGVVWRHR RELLSAGGEA TRIIYQSLLH GWCIRGNARE VRRVMDQMKS LGFCPSLSSY NDLLLCICKR
301: NVKFNPSAII PEATNLMTEM RTAGVPPTTV SFNILLSSLS RVRRIKEAYR VLYLMRQGEA GCHPDWASYH IVVRLMYLSG RFVRGNTLVD EMLEAGLLPN
401: VHFYQSLVEL LCALDRVDHA LQMFERMKKY SGEGLHNLML VDNYN

Best Arabidopsis Sequence Match ( AT5G61370.1 )
(BLAST)

001: MMSTTVRLNR FTYLTSTAKL TRYFCSHHLV DRSETALHEV IRIVSSPVGG LDDLEENLNQ VSVSPSSNLV TQVIESCKNE TSPRRLLRFF SWSCKSLGSS
101: LHDKEFNYVL RVLAEKKDHT AMQILLSDLR KENRAMDKQT FSIVAETLVK VGKEEDAIGI FKILDKFSCP QDGFTVTAII SALCSRGHVK RALGVMHHHK
201: DVISGNELSV YRSLLFGWSV QRNVKEARRV IQDMKSAGIT PDLFCFNSLL TCLCERNVNR NPSGLVPEAL NIMLEMRSYK IQPTSMSYNI LLSCLGRTRR
301: VRESCQILEQ MKRSGCDPDT GSYYFVVRVL YLTGRFGKGN QIVDEMIERG FRPERKFYYD LIGVLCGVER VNFALQLFEK MKRSSVGGYG QVYDLLIPKL
401: CKGGNFEKGR ELWEEALSID VTLSCSISLL DPSVTEVFKP MKMKEEAAMV DRRALNLKIH ARMNKTKPKL KLKPKRRSKT KKKNLQH

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLJ6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.