CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02152	Canola	mitochondrion	93.58	93.58
AT5G61370.1	Thale cress	mitochondrion	77.64	77.0
VIT_01s0127g00660.t01	Wine grape	cytosol	55.69	59.51
KRH03514	Soybean	mitochondrion	57.97	57.14
KRH56887	Soybean	mitochondrion	50.72	54.08
Os10t0422300-00	Rice	mitochondrion	40.79	41.04
TraesCS3A01G389400.1	Wheat	mitochondrion	39.13	38.49
TraesCS3D01G380400.1	Wheat	mitochondrion	39.13	38.49
TraesCS3B01G419500.1	Wheat	mitochondrion	38.92	38.29
Zm00001d032934_P001	Maize	mitochondrion	39.34	38.08
GSMUA_Achr4P18270_001	Banana	mitochondrion	33.33	36.18
HORVU4Hr1G025220.1	Barley	cytosol, plastid	27.12	35.31
KXG38503	Sorghum	mitochondrion	38.72	27.7
HORVU3Hr1G081750.4	Barley	mitochondrion	38.72	27.54

Protein Annotations

EnsemblPlants:CDY68950	EnsemblPlantsGene:GSBRNA2T00081469001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF620
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY68950	ProteinID:CDY68950.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI0004EDDD91	UniProt:A0A078JR94	MapMan:35.1	:	:

Description

BnaCnng61170DBnaCnng61170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JR94]

Coordinates

chrLK038318:-:2222..3673

Molecular Weight (calculated)

54771.0 Da

IEP (calculated)

9.882

GRAVY (calculated)

-0.249

Length

483 amino acids

Sequence
(BLAST)

001: MISIVRSNGF AFLTNTTKLT RCLCSHHLVD HASTELQEVI RIVSSHIGGL DELEEHLNKV SVSPSTNFVT QVIDSCKNET SPRRLLRFFS WSCKHLGSSL
101: QDKEFNHVLR VLSEKKDYTA IQILLSDLRK ETRAMDKQTF SLVAETLVKI GKEEDAIGIF KILDKFSCPR DSFTVTAIIS ALCSKGHVKR ALGVMHHHKD
201: LVSGNELSVY RSLLFGWSVQ RNVKEARRVI QDMKSAGIAP DLLCYNTMLT CLCERNVTRN PSGLVPEALN IMLEMRSYKV QPTSLSYNIL LSCLGRTRRV
301: KESCQILEQM KRSGCDPDTA SYYFVVRVLY LTGRFGKGNQ TVDEMIERGL RPERKFYYDL IGVLCGVKRV NFALQLFEKM KRSSVGGFGQ VYDLLIPKLC
401: KGGDFEKGRE LWEEAMSLGV TLSCSVELLD PSVTEVFKPM KKREEAALVD PRALNLKIRP KMDRAKPKVK SKPKRRSKTN KNI

Best Arabidopsis Sequence Match ( AT5G61370.1 )
(BLAST)

001: MMSTTVRLNR FTYLTSTAKL TRYFCSHHLV DRSETALHEV IRIVSSPVGG LDDLEENLNQ VSVSPSSNLV TQVIESCKNE TSPRRLLRFF SWSCKSLGSS
101: LHDKEFNYVL RVLAEKKDHT AMQILLSDLR KENRAMDKQT FSIVAETLVK VGKEEDAIGI FKILDKFSCP QDGFTVTAII SALCSRGHVK RALGVMHHHK
201: DVISGNELSV YRSLLFGWSV QRNVKEARRV IQDMKSAGIT PDLFCFNSLL TCLCERNVNR NPSGLVPEAL NIMLEMRSYK IQPTSMSYNI LLSCLGRTRR
301: VRESCQILEQ MKRSGCDPDT GSYYFVVRVL YLTGRFGKGN QIVDEMIERG FRPERKFYYD LIGVLCGVER VNFALQLFEK MKRSSVGGYG QVYDLLIPKL
401: CKGGNFEKGR ELWEEALSID VTLSCSISLL DPSVTEVFKP MKMKEEAAMV DRRALNLKIH ARMNKTKPKL KLKPKRRSKT KKKNLQH

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLJ6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.