Factsheet for VIT_17s0000g05090.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_09s0002g02330.t01
VIT_11s0016g02050.t01
VIT_12s0035g00690.t01
VIT_16s0098g00580.t01
VIT_18s0001g08630.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60960.1	VIT_18s0001g08630.t01	AT1G44920.1	21297037
AT5G60960.1	VIT_12s0035g00690.t01	AT1G58100.1	21297037
AT5G60960.1	VIT_09s0002g02330.t01	AT4G26110.1	21297037
AT5G60960.1	VIT_11s0016g02050.t01	AT4G26110.1	21297037
AT5G60960.1	VIT_16s0098g00580.t01	AT5G24680.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34092	Soybean	mitochondrion	62.59	65.42
KRG92684	Soybean	mitochondrion, plastid	61.09	63.85
PGSC0003DMT400063323	Potato	mitochondrion	60.9	62.19
Solyc03g114920.1.1	Tomato	mitochondrion	60.34	61.49
Bra012992.1-P	Field mustard	mitochondrion	58.46	60.39
AT5G60960.1	Thale cress	plastid	58.46	59.69
GSMUA_Achr2P06230_001	Banana	mitochondrion	48.87	50.68
Os07t0603900-01	Rice	mitochondrion	43.05	47.12
Zm00001d006822_P001	Maize	mitochondrion	42.67	46.9
EER97500	Sorghum	mitochondrion	42.29	46.49
TraesCS2A01G175500.1	Wheat	mitochondrion	41.35	45.64
TraesCS2B01G201800.1	Wheat	mitochondrion	41.17	45.44
TraesCS2D01G182800.1	Wheat	mitochondrion	40.98	45.23
HORVU2Hr1G032910.2	Barley	plastid	41.35	44.09
VIT_01s0127g00660.t01	Wine grape	cytosol	20.86	24.56

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100262070	wikigene:100262070	MapMan:17.7.1.3.1	ProteinID:CBI15328	ProteinID:CBI15328.3
UniProt:D7SIL7	EMBL:FN594950	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100262070	wikigene:LOC100262070	PFAM:PF01535	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF831	InterPro:Pentatricopeptide_repeat	SignalP:SignalP-noTM	TIGR:TC59170
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001BE0BAF	ArrayExpress:VIT_17s0000g05090	EnsemblPlantsGene:VIT_17s0000g05090	EnsemblPlants:VIT_17s0000g05090.t01
unigene:Vvi.5924	RefSeq:XP_002265397	RefSeq:XP_002265397.2	RefSeq:XP_019082040.1	SEG:seg	:

Description

No Description!

Coordinates

chr17:-:5578407..5580163

Molecular Weight (calculated)

60424.0 Da

IEP (calculated)

9.771

GRAVY (calculated)

-0.361

Length

532 amino acids

Sequence
(BLAST)

001: MWRSSTPLTS LQLRRLLLRC FSSSSSSSSS SSSSSSSSLV QSYCLSPTLS LDPYCLCSSQ RHFVSPSFPL SRRFSSQPNN SADDDHSQIA QSLSSELLKD
101: PDSEPVPIIQ RLQLSFSHIT PSPPLILQTL NTSPDAGRTV LGFYKWLSSN PKFVHSDETI SFFVDYFGRR KDFKAIHEVL MDGRNFAGAK TLESAIDRLV
201: RAGRATQVVS FFDRMEVDYG FRRDRESLTM VVSKLCEHGF ASHAEKVVKN VANEIFPNET ICDLLIKGWC VDGKLDEARR LAEEMFRGGF EIGTMAYNSI
301: LDCICKLCRK KDPFRLESEA EKILVDMDVA GVPRNVETFN VLITNLCKIR KTEDAMKLFY RMGEWGCYPN ETTFLVLTRS LYQAARVGEG DEMIDRMKSA
401: GFGNALDKKA YYEFIKILCG IERIDHAMSL FSKMKEDGCK PGIKTYDLLM GKLCAHGRLD KANALFSEAV NRGVPVESKA YKLDPRFVKK PTVAKKEKKR
501: ETLPEKMARK RRRLRKIRLS FVKKPKRMRR AF

Best Arabidopsis Sequence Match ( AT5G60960.1 )
(BLAST)

001: MPPSLPSLQL RRLLLRSFIS SSSVNTLQSQ PRIISSKPLF SPLPPSRSSI FSTFPSRFFS SETNAESESL DSNEIALSFS KELTGNPDAE SQTISQRFNL
101: SFSHITPNPD LILQTLNLSP EAGRAALGFN EWLDSNSNFS HTDETVSFFV DYFGRRKDFK GMLEIISKYK GIAGGKTLES AIDRLVRAGR PKQVTDFFEK
201: MENDYGLKRD KESLTLVVKK LCEKGHASIA EKMVKNTANE IFPDENICDL LISGWCIAEK LDEATRLAGE MSRGGFEIGT KAYNMMLDCV CKLCRKKDPF
301: KLQPEVEKVL LEMEFRGVPR NTETFNVLIN NLCKIRRTEE AMTLFGRMGE WGCQPDAETY LVLIRSLYQA ARIGEGDEMI DKMKSAGYGE LLNKKEYYGF
401: LKILCGIERL EHAMSVFKSM KANGCKPGIK TYDLLMGKMC ANNQLTRANG LYKEAAKKGI AVSPKEYRVD PRFMKKKTKE VDSNVKKRET LPEKTARKKK
501: RLKQINMSFV KKPHNKMRRR M

Arabidopsis Description

PNM1PNM1 [Source:UniProtKB/TrEMBL;Acc:A0A178U8V9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.