Factsheet for VIT_18s0001g08630.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g05090.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G44920.1	VIT_17s0000g05090.t01	AT5G60960.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15453	Soybean	extracellular, golgi, plastid	24.23	69.23
CDY47956	Canola	plastid	59.62	61.51
AT1G44920.1	Thale cress	mitochondrion, plastid	58.08	58.53
CDY12577	Canola	mitochondrion, plastid	60.0	58.21
GSMUA_Achr4P07390_001	Banana	plastid	58.85	57.52
KRH05538	Soybean	plastid	57.69	55.97
Zm00001d031553_P001	Maize	endoplasmic reticulum, extracellular	21.15	55.0
Zm00001d033873_P001	Maize	plastid	54.62	54.41
Solyc04g077500.2.1	Tomato	plastid	59.62	54.01
Os03t0729100-01	Rice	plastid	45.38	53.88
PGSC0003DMT400012587	Potato	plastid	58.85	53.31
EER90941	Sorghum	plastid	53.85	52.63
Bra041008.1-P	Field mustard	mitochondrion, plastid	58.08	51.01
TraesCS4D01G059100.1	Wheat	plastid	51.15	49.63
TraesCS4A01G255600.1	Wheat	plastid	50.0	49.24
TraesCS4B01G059400.1	Wheat	plastid	48.08	46.99

Protein Annotations

EntrezGene:100257450	wikigene:100257450	MapMan:35.2	ProteinID:CBI19363	ProteinID:CBI19363.3	InterPro:DUF3054
UniProt:E0CNY5	EMBL:FN595227	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009536	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100257450	wikigene:LOC100257450
PFAM:PF11255	PANTHER:PTHR35283	TIGR:TC60393	TMHMM:TMhelix	UniParc:UPI00015C824D	ArrayExpress:VIT_18s0001g08630
EnsemblPlantsGene:VIT_18s0001g08630	EnsemblPlants:VIT_18s0001g08630.t01	unigene:Vvi.2823	RefSeq:XP_002285461	RefSeq:XP_002285461.1	SEG:seg

Description

No Description!

Coordinates

chr18:-:7062641..7067108

Molecular Weight (calculated)

27859.7 Da

IEP (calculated)

10.546

GRAVY (calculated)

0.099

Length

260 amino acids

Sequence
(BLAST)

001: MLLVSQAASG GLSGRACCSF SPPPKFSKPK PTLFSNRKSS RRTLHITLAK ADGGLDSTPA AKQIPSDSNP SLPLNNDPTV FVGQESVPLE GVIQFEKPNA
101: TASRLEKWGR VALLAGGDVL ALILFSAIGR FSHGFSVIDF ETLRTADPFI AGWTLSAYFL GGYGDDGRGM NGLSKAVLAA AKSWALGIPL GLIIRAATSG
201: HIPSSNFILV TMGSTGFLLI GWRALLFSIF PNDKSKKNDV YRRGSPFELF ELLTSLVRRW

Best Arabidopsis Sequence Match ( AT1G44920.1 )
(BLAST)

001: MRMLVLRTPT GPVSAVRFIT KSKPSPFSSP DSWLLPAPNT HRSRPRVVLA LSNPDGSVNS KPSTSASQIP SSGDETVFVG QDNVPLEGVI QFDKPSSTSS
101: SNITKWGRVA LLAGGDVLAL LIFSAIGRFS HGFPVFSLDT LHTADPFIAG WFLSAYFLGG YAEEGRGMKG KSKAVVAAAK SWIVGTPLGI IIRSASSGHI
201: PAYSFVLVTM GSTAVLLIGW RALLFSVLPT ESKKKDDTYR KGSAFELFEL LTSLIRRW

Arabidopsis Description

T12C22.21 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPD7]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.