Factsheet for GSMUA_Achr4P07390_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P06230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G44920.1	GSMUA_Achr2P06230_001	AT5G60960.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15453	Soybean	extracellular, golgi, plastid	20.3	59.34
VIT_18s0001g08630.t01	Wine grape	plastid	57.52	58.85
EER90941	Sorghum	plastid	58.27	58.27
Zm00001d033873_P001	Maize	plastid	56.77	57.85
Zm00001d031553_P001	Maize	endoplasmic reticulum, extracellular	21.05	56.0
TraesCS4D01G059100.1	Wheat	plastid	54.89	54.48
Os03t0729100-01	Rice	plastid	44.36	53.88
TraesCS4A01G255600.1	Wheat	plastid	53.38	53.79
AT1G44920.1	Thale cress	mitochondrion, plastid	51.88	53.49
CDY47956	Canola	plastid	50.38	53.17
TraesCS4B01G059400.1	Wheat	plastid	51.5	51.5
CDY12577	Canola	mitochondrion, plastid	50.38	50.0
Solyc04g077500.2.1	Tomato	plastid	53.38	49.48
PGSC0003DMT400012587	Potato	plastid	52.26	48.43
KRH05538	Soybean	plastid	46.24	45.9
Bra041008.1-P	Field mustard	mitochondrion, plastid	48.87	43.92

Protein Annotations

EnsemblPlants:GSMUA_Achr4P07390_001	EnsemblPlants:GSMUA_Achr4T07390_001	EnsemblPlantsGene:GSMUA_Achr4G07390_001	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	GO:GO:0016020	GO:GO:0016021	InterPro:DUF3054
PANTHER:PTHR35283	PFAM:PF11255	SEG:seg	TMHMM:TMhelix	UniParc:UPI00029578E7	UniProt:M0SLV6
MapMan:35.2	:	:	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G07390_001]

Coordinates

chr4:-:5492634..5496378

Molecular Weight (calculated)

28278.2 Da

IEP (calculated)

10.506

GRAVY (calculated)

0.126

Length

266 amino acids

Sequence
(BLAST)

001: MLLLSQAPNG ALSARRCPSS SSSAVSSSLS PFSKTDPSLF SKSRPRFPSR NPRRPRPLSL SAPAVDPGRS ARPLSSPPAA VQEDEIVSVG DDGVPLEGVI
101: QFEKPGGSSK LLTWAQVGLL AGGDVLCLLI FSAVGRFSHG LPVFDFETLR TADPFIAGWV LSAYFLGGYG DDGRGVNGSM KAVLAAVKSW AIGIPLGLVI
201: RSATSGHVPP TPFMLITMGS TGILLIAWRA LVCNLLPSNR NKQNDVYKRG SAFELFELLT SLVRRW

Best Arabidopsis Sequence Match ( AT1G44920.1 )
(BLAST)

001: MRMLVLRTPT GPVSAVRFIT KSKPSPFSSP DSWLLPAPNT HRSRPRVVLA LSNPDGSVNS KPSTSASQIP SSGDETVFVG QDNVPLEGVI QFDKPSSTSS
101: SNITKWGRVA LLAGGDVLAL LIFSAIGRFS HGFPVFSLDT LHTADPFIAG WFLSAYFLGG YAEEGRGMKG KSKAVVAAAK SWIVGTPLGI IIRSASSGHI
201: PAYSFVLVTM GSTAVLLIGW RALLFSVLPT ESKKKDDTYR KGSAFELFEL LTSLIRRW

Arabidopsis Description

T12C22.21 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPD7]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.