Factsheet for TraesCS4A01G255600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G175500.1
TraesCS2B01G201800.1
TraesCS2D01G182800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G44920.1	TraesCS2A01G175500.1	AT5G60960.1	21297037
AT1G44920.1	TraesCS2B01G201800.1	AT5G60960.1	21297037
AT1G44920.1	TraesCS2D01G182800.1	AT5G60960.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G059100.1	Wheat	plastid	94.32	92.91
TraesCS4B01G059400.1	Wheat	plastid	90.15	89.47
EER90941	Sorghum	plastid	74.24	73.68
Zm00001d033873_P001	Maize	plastid	72.35	73.18
Zm00001d031553_P001	Maize	endoplasmic reticulum, extracellular	26.14	69.0
Os03t0729100-01	Rice	plastid	54.55	65.75
KRH15453	Soybean	extracellular, golgi, plastid	19.7	57.14
GSMUA_Achr4P07390_001	Banana	plastid	53.79	53.38
VIT_18s0001g08630.t01	Wine grape	plastid	49.24	50.0
AT1G44920.1	Thale cress	mitochondrion, plastid	46.59	47.67
CDY47956	Canola	plastid	45.45	47.62
CDY12577	Canola	mitochondrion, plastid	45.83	45.15
KRH05538	Soybean	plastid	45.45	44.78
Solyc04g077500.2.1	Tomato	plastid	47.35	43.55
PGSC0003DMT400012587	Potato	plastid	46.21	42.51
Bra041008.1-P	Field mustard	mitochondrion, plastid	43.94	39.19

Protein Annotations

EnsemblPlants:TraesCS4A01G255600.1	EnsemblPlantsGene:TraesCS4A01G255600	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009536	InterPro:DUF3054	PANTHER:PTHR35283	PFAM:PF11255	SEG:seg
TMHMM:TMhelix	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:567489300..567492747

Molecular Weight (calculated)

27429.2 Da

IEP (calculated)

10.452

GRAVY (calculated)

0.193

Length

264 amino acids

Sequence
(BLAST)

001: MLLVSQAANG SLSARRLPSK PLASRRGANP YPLFAGPRVA RRRLALSGAA DARDAPRRAS ATHAAAGEGP SGSPAAEDPV LLGVSDDRVP LEGVIQVERP
101: GQADAQSKLV SYAKIGLLAG GDLLCLLVFS AIGRLSHGLP VLDAETFKTA DPFIAGWLLS AYLLGGFGDD AKGSNGVGNA VTVAAKSWAV GIPLGIAIRS
201: VTAGHIPQIP FVFVAMGSTG VLLTAWRALI SQVLSAGQSK KDDVYKKGNP FELFELLTSL VRRW

Best Arabidopsis Sequence Match ( AT1G44920.1 )
(BLAST)

001: MRMLVLRTPT GPVSAVRFIT KSKPSPFSSP DSWLLPAPNT HRSRPRVVLA LSNPDGSVNS KPSTSASQIP SSGDETVFVG QDNVPLEGVI QFDKPSSTSS
101: SNITKWGRVA LLAGGDVLAL LIFSAIGRFS HGFPVFSLDT LHTADPFIAG WFLSAYFLGG YAEEGRGMKG KSKAVVAAAK SWIVGTPLGI IIRSASSGHI
201: PAYSFVLVTM GSTAVLLIGW RALLFSVLPT ESKKKDDTYR KGSAFELFEL LTSLIRRW

Arabidopsis Description

T12C22.21 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPD7]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.