CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER97500

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G44920.1	EER97500	AT5G60960.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033873_P001	Maize	plastid	90.6	92.34
Zm00001d031553_P001	Maize	endoplasmic reticulum, extracellular	29.32	78.0
TraesCS4D01G059100.1	Wheat	plastid	74.81	74.25
TraesCS4A01G255600.1	Wheat	plastid	73.68	74.24
Os03t0729100-01	Rice	plastid	60.15	73.06
TraesCS4B01G059400.1	Wheat	plastid	71.05	71.05
KRH15453	Soybean	extracellular, golgi, plastid	20.3	59.34
GSMUA_Achr4P07390_001	Banana	plastid	58.27	58.27
VIT_18s0001g08630.t01	Wine grape	plastid	52.63	53.85
CDY47956	Canola	plastid	47.74	50.4
AT1G44920.1	Thale cress	mitochondrion, plastid	48.5	50.0
CDY12577	Canola	mitochondrion, plastid	47.37	47.01
KRH05538	Soybean	plastid	46.62	46.27
Solyc04g077500.2.1	Tomato	plastid	49.62	45.99
PGSC0003DMT400012587	Potato	plastid	47.37	43.9
Bra041008.1-P	Field mustard	mitochondrion, plastid	46.24	41.55

Protein Annotations

EnsemblPlants:EER90941	EnsemblPlantsGene:SORBI_3001G104800	EntrezGene:8059959	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	GO:GO:0016020	GO:GO:0016021	InterPro:DUF3054
PANTHER:PTHR35283	PFAM:PF11255	ProteinID:EER90941	ProteinID:EER90941.1	RefSeq:XP_002463943.1	SEG:seg
TMHMM:TMhelix	unigene:Sbi.2916	UniParc:UPI0001A82402	UniProt:C5WM04	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr1:+:8027667..8031799

Molecular Weight (calculated)

27732.5 Da

IEP (calculated)

10.031

GRAVY (calculated)

0.141

Length

266 amino acids

Sequence
(BLAST)

001: MLLVSQAANG SLSARRLPSK PPGPSTTNPY PLFANPRLVR RRLALSGTGA DQAPRRPAST PAAAGEGPSG SSPAAAATED PVLVRVADDG VPLEGVIQIE
101: KPGDAGVESK LVSYAKLGLL AGGDVFCLLL FSAIGRFSHG LPVLDAETFK TADPFIAGWL LSAYLLGGFG DDAKGRNGVG NAVIAAAKSW AVGIPLGLAI
201: RAVTSGHIPP TPFILVTMGS TGVLLTAWRA LVSQLLSNQQ KQQDDVYRRG SPFELFELLT SLVRRW

Best Arabidopsis Sequence Match ( AT1G44920.1 )
(BLAST)

001: MRMLVLRTPT GPVSAVRFIT KSKPSPFSSP DSWLLPAPNT HRSRPRVVLA LSNPDGSVNS KPSTSASQIP SSGDETVFVG QDNVPLEGVI QFDKPSSTSS
101: SNITKWGRVA LLAGGDVLAL LIFSAIGRFS HGFPVFSLDT LHTADPFIAG WFLSAYFLGG YAEEGRGMKG KSKAVVAAAK SWIVGTPLGI IIRSASSGHI
201: PAYSFVLVTM GSTAVLLIGW RALLFSVLPT ESKKKDDTYR KGSAFELFEL LTSLIRRW

Arabidopsis Description

T12C22.21 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPD7]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.