CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90941
OQU84154

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60960.1	EER90941	AT1G44920.1	21297037
AT5G60960.1	OQU84154	AT5G24680.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006822_P001	Maize	mitochondrion	90.08	90.08
Os07t0603900-01	Rice	mitochondrion	88.02	87.65
TraesCS2A01G175500.1	Wheat	mitochondrion	83.68	84.02
TraesCS2B01G201800.1	Wheat	mitochondrion	83.06	83.4
TraesCS2D01G182800.1	Wheat	mitochondrion	83.06	83.4
HORVU2Hr1G032910.2	Barley	plastid	82.02	79.56
GSMUA_Achr2P06230_001	Banana	mitochondrion	59.71	56.34
KRH34092	Soybean	mitochondrion	47.31	44.99
KRG92684	Soybean	mitochondrion, plastid	46.9	44.6
Bra012992.1-P	Field mustard	mitochondrion	46.07	43.3
Solyc03g114920.1.1	Tomato	mitochondrion	45.87	42.53
VIT_17s0000g05090.t01	Wine grape	mitochondrion	46.49	42.29
PGSC0003DMT400063323	Potato	mitochondrion	45.25	42.03
AT5G60960.1	Thale cress	plastid	44.83	41.65
KXG38503	Sorghum	mitochondrion	22.93	16.44

Protein Annotations

Gene3D:1.25.40.10	MapMan:17.7.1.3.1	EntrezGene:8079012	UniProt:C5XDV4	EnsemblPlants:EER97500	ProteinID:EER97500
ProteinID:EER97500.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF831	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3002G367800	unigene:Sbi.5332	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A838A8	RefSeq:XP_002460979.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:72756737..72759845

Molecular Weight (calculated)

53942.8 Da

IEP (calculated)

10.634

GRAVY (calculated)

-0.262

Length

484 amino acids

Sequence
(BLAST)

001: MWRRQLFRRL FPSPATGGTA APPSPFLRHL STSSTPTPAA SLASSLASAL TALSTTPPPA TTPDAYFSLH FSDVRPTNAL LAEALALSPP ATSRAAAELF
101: RFLVRRRSLH PSDGALAPVV RHLARRRDFP AVRALIQEFP TALGPATLDA YLQQLARAGR PTDAVKVFDE LPEQLRNREA LTLLVSALSA EGFPSHAERA
201: AKKVANEIFP DDNICTLLVS GYANAGKLDH ALRLIGETRR GGFQPGLDAY NAVLDCVCRL CRKKDPLRMP MEAEKFLVDM EANGIPRDAG TFRVLITNFC
301: KIRKTEDAMN LFRCMGEWGC SPDADTYLVL IRSLYQAART SEGDEMMTWM RSAGFGDKLD RKAYYGFIKI LCGIDRVEHA LKVFRMMKGY GHAPGVKSYS
401: LLIEKLARHN LGDRSSALYR EAVARGVPVA QGEYSIDKRY VKAKKEKKVK KRLTLPEKMR LKSKRLYKLR MSFVKKPKRR MVRV

Best Arabidopsis Sequence Match ( AT5G60960.1 )
(BLAST)

001: MPPSLPSLQL RRLLLRSFIS SSSVNTLQSQ PRIISSKPLF SPLPPSRSSI FSTFPSRFFS SETNAESESL DSNEIALSFS KELTGNPDAE SQTISQRFNL
101: SFSHITPNPD LILQTLNLSP EAGRAALGFN EWLDSNSNFS HTDETVSFFV DYFGRRKDFK GMLEIISKYK GIAGGKTLES AIDRLVRAGR PKQVTDFFEK
201: MENDYGLKRD KESLTLVVKK LCEKGHASIA EKMVKNTANE IFPDENICDL LISGWCIAEK LDEATRLAGE MSRGGFEIGT KAYNMMLDCV CKLCRKKDPF
301: KLQPEVEKVL LEMEFRGVPR NTETFNVLIN NLCKIRRTEE AMTLFGRMGE WGCQPDAETY LVLIRSLYQA ARIGEGDEMI DKMKSAGYGE LLNKKEYYGF
401: LKILCGIERL EHAMSVFKSM KANGCKPGIK TYDLLMGKMC ANNQLTRANG LYKEAAKKGI AVSPKEYRVD PRFMKKKTKE VDSNVKKRET LPEKTARKKK
501: RLKQINMSFV KKPHNKMRRR M

Arabidopsis Description

PNM1PNM1 [Source:UniProtKB/TrEMBL;Acc:A0A178U8V9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.