Factsheet for PGSC0003DMT400063323

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000751
PGSC0003DMT400012587
PGSC0003DMT400055114
PGSC0003DMT400069227

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60960.1	PGSC0003DMT400012587	AT1G44920.1	21297037
AT5G60960.1	PGSC0003DMT400000751	AT4G26110.1	21297037
AT5G60960.1	PGSC0003DMT400055114	AT4G26110.1	21297037
AT5G60960.1	PGSC0003DMT400069227	AT5G24680.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g114920.1.1	Tomato	mitochondrion	97.31	97.13
KRH34092	Soybean	mitochondrion	62.0	63.46
KRG92684	Soybean	mitochondrion, plastid	60.08	61.49
VIT_17s0000g05090.t01	Wine grape	mitochondrion	62.19	60.9
Bra012992.1-P	Field mustard	mitochondrion	57.58	58.25
AT5G60960.1	Thale cress	plastid	56.43	56.43
GSMUA_Achr2P06230_001	Banana	mitochondrion	47.41	48.15
EER97500	Sorghum	mitochondrion	42.03	45.25
Zm00001d006822_P001	Maize	mitochondrion	42.03	45.25
Os07t0603900-01	Rice	mitochondrion	42.03	45.06
TraesCS2A01G175500.1	Wheat	mitochondrion	40.31	43.57
TraesCS2D01G182800.1	Wheat	mitochondrion	40.31	43.57
TraesCS2B01G201800.1	Wheat	mitochondrion	40.12	43.36
HORVU2Hr1G032910.2	Barley	plastid	40.12	41.88

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102585028	MapMan:17.7.1.3.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005739	InterPro:IPR002885	InterPro:IPR011990	UniProt:M1CAH1
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	EnsemblPlantsGene:PGSC0003DMG400024629	PGSC:PGSC0003DMG400024629	EnsemblPlants:PGSC0003DMT400063323
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF831	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI00029612D2	RefSeq:XP_006345106.1	SEG:seg	:	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024629]

Coordinates

chr3:-:54870872..54872801

Molecular Weight (calculated)

59354.5 Da

IEP (calculated)

9.003

GRAVY (calculated)

-0.403

Length

521 amino acids

Sequence
(BLAST)

001: MRRITTPSTL RTLLRRCIYS SATNQTHHLP CSQLSLSKTH FFTSPLPHYD SFSFSHYSTS FRSFSSQPES DQEETTAQSL SSELVKELDA ESLSIPQSLD
101: LSFSHVNLTP SLILTTLNLS PDAGRTVLGF FKWVKSKESF KVDDEVVSYF VDYFGRRKDF KAAQDVLIDG IGLAGRKTLE SMVDRLVRAG RSTQTVAFFE
201: NMEKDYGLVR DLDSLKLVVS RLCEHGFASY AEKMVKSLAS EFFPDEYICD MLIRGWCIDG KLDEAQRLAG EMYRGGFEIG ASAYNAILDC VCKLCRKKDP
301: FRLQSEAENV LLEMEEKGVP RDVETFNVLI TNLCKIRKTE DALNLFYRMG EWGCNPDETT FLTLIRSLYQ AARVGEGDEM IDRMKSAGFG DALDKKAYYE
401: FLKILCGIER LDHAMSVFAK MKEDGCKPGL KTYDLLIGKM VAHNRVDKAN ALYKEAESNE LAVEPKAYMV HPKYAKKKSA PAKKEKKRET FPEKMARKRT
501: KLKKIRLSYV KKPKKMARRA F

Best Arabidopsis Sequence Match ( AT5G60960.1 )
(BLAST)

001: MPPSLPSLQL RRLLLRSFIS SSSVNTLQSQ PRIISSKPLF SPLPPSRSSI FSTFPSRFFS SETNAESESL DSNEIALSFS KELTGNPDAE SQTISQRFNL
101: SFSHITPNPD LILQTLNLSP EAGRAALGFN EWLDSNSNFS HTDETVSFFV DYFGRRKDFK GMLEIISKYK GIAGGKTLES AIDRLVRAGR PKQVTDFFEK
201: MENDYGLKRD KESLTLVVKK LCEKGHASIA EKMVKNTANE IFPDENICDL LISGWCIAEK LDEATRLAGE MSRGGFEIGT KAYNMMLDCV CKLCRKKDPF
301: KLQPEVEKVL LEMEFRGVPR NTETFNVLIN NLCKIRRTEE AMTLFGRMGE WGCQPDAETY LVLIRSLYQA ARIGEGDEMI DKMKSAGYGE LLNKKEYYGF
401: LKILCGIERL EHAMSVFKSM KANGCKPGIK TYDLLMGKMC ANNQLTRANG LYKEAAKKGI AVSPKEYRVD PRFMKKKTKE VDSNVKKRET LPEKTARKKK
501: RLKQINMSFV KKPHNKMRRR M

Arabidopsis Description

PNM1PNM1 [Source:UniProtKB/TrEMBL;Acc:A0A178U8V9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.