Factsheet for PGSC0003DMT400055114

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000471
PGSC0003DMT400000751
PGSC0003DMT400008912
PGSC0003DMT400014179
PGSC0003DMT400015879
PGSC0003DMT400029160
PGSC0003DMT400030914
PGSC0003DMT400055114
PGSC0003DMT400057989
PGSC0003DMT400063323
PGSC0003DMT400083237

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26110.1	PGSC0003DMT400029160	AT2G24090.1	21798944
AT4G26110.1	PGSC0003DMT400014179	AT2G43060.1	21798944
AT4G26110.1	PGSC0003DMT400000471	AT2G45860.1	21798944
AT4G26110.1	PGSC0003DMT400030914	AT3G02190.1	21798944
AT4G26110.1	PGSC0003DMT400000751	AT4G26110.1	19228338
AT4G26110.1	PGSC0003DMT400055114	AT4G26110.1	19228338
AT4G26110.1	PGSC0003DMT400000751	AT4G26110.1	21798944
AT4G26110.1	PGSC0003DMT400055114	AT4G26110.1	21798944
AT4G26110.1	PGSC0003DMT400000751	AT5G56950.1	21798944
AT4G26110.1	PGSC0003DMT400055114	AT5G56950.1	21798944
AT4G26110.1	PGSC0003DMT400063323	AT5G60960.1	21297037
AT5G56950.1	PGSC0003DMT400014179	AT2G43060.1	21798944
AT5G56950.1	PGSC0003DMT400000471	AT2G45860.1	21798944
AT5G56950.1	PGSC0003DMT400008912	AT2G47610.1	21798944
AT5G56950.1	PGSC0003DMT400015879	AT2G47610.1	21798944
AT5G56950.1	PGSC0003DMT400057989	AT2G47610.1	21798944
AT5G56950.1	PGSC0003DMT400083237	AT2G47610.1	21798944
AT5G56950.1	PGSC0003DMT400030914	AT3G02190.1	21798944
AT5G56950.1	PGSC0003DMT400000751	AT4G26110.1	19228338
AT5G56950.1	PGSC0003DMT400055114	AT4G26110.1	19228338
AT5G56950.1	PGSC0003DMT400000751	AT5G56950.1	19228338
AT5G56950.1	PGSC0003DMT400055114	AT5G56950.1	19228338
AT5G56950.1	PGSC0003DMT400000751	AT5G56950.1	19825649
AT5G56950.1	PGSC0003DMT400055114	AT5G56950.1	19825649

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g018810.2.1	Tomato	nucleus	94.65	94.15
PGSC0003DMT400000751	Potato	nucleus	81.28	82.16
KRH37411	Soybean	nucleus	74.6	76.44
KRH12415	Soybean	endoplasmic reticulum	72.99	75.21
PGSC0003DMT400006378	Potato	nucleus	50.27	74.9
VIT_09s0002g02330.t01	Wine grape	nucleus	75.67	74.28
VIT_11s0016g02050.t01	Wine grape	nucleus	75.94	73.58
CDY50468	Canola	nucleus	72.73	71.96
KRH19202	Soybean	nucleus	71.39	71.2
CDY50472	Canola	nucleus	71.12	71.12
AT5G56950.1	Thale cress	nucleus	70.86	70.86
AT4G26110.1	Thale cress	nucleus	70.05	70.43
CDX89363	Canola	nucleus	68.45	69.95
Bra013951.1-P	Field mustard	nucleus	68.18	69.67
CDX94372	Canola	nucleus	68.18	69.48
KRH02690	Soybean	nucleus	70.32	69.39
CDY50005	Canola	nucleus	63.64	67.81
CDY50473	Canola	nucleus	33.69	67.02
CDY65997	Canola	nucleus	14.97	65.88
PGSC0003DMT400012517	Potato	nucleus	55.62	59.6
Bra002778.1-P	Field mustard	nucleus	65.51	59.04
PGSC0003DMT400021185	Potato	nucleus	51.07	58.41
CDY52429	Canola	nucleus	31.82	40.2
HORVU1Hr1G018340.1	Barley	cytosol	2.67	34.48
PGSC0003DMT400083149	Potato	cytosol	22.46	32.18
PGSC0003DMT400017852	Potato	cytosol	21.66	31.76
PGSC0003DMT400056432	Potato	cytosol	17.65	31.58
PGSC0003DMT400050243	Potato	nucleus	18.72	24.65
PGSC0003DMT400037682	Potato	nucleus	16.31	21.48

Protein Annotations

EntrezGene:102602088	MapMan:12.2.6	Gene3D:3.30.1120.90	ncoils:Coil	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
UniProt:M1BXD5	InterPro:NAP-like_sf	InterPro:NAP_family	PFAM:PF00956	EnsemblPlantsGene:PGSC0003DMG400021385	PGSC:PGSC0003DMG400021385
EnsemblPlants:PGSC0003DMT400055114	PANTHER:PTHR11875	PANTHER:PTHR11875:SF101	SUPFAM:SSF143113	UniParc:UPI000294CC32	RefSeq:XP_006338185.1
SEG:seg	:	:	:	:	:

Description

Nucleosome assembly protein 1 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400021385]

Coordinates

chr5:+:20739432..20743035

Molecular Weight (calculated)

42818.9 Da

IEP (calculated)

4.080

GRAVY (calculated)

-0.997

Length

374 amino acids

Sequence
(BLAST)

001: MSNAKDNFSV ADLSAALNAG DRADLVNVLK NKLQDLTGKH SDVLENLSPI VRKRVEVLRE IQTQHDDLEA NFFEERAALE AKYQKFYQPL YTKRFEIVNG
101: VIEVEGGTTE AAVADQQVDK DAVEKGVPDF WLTAMKNNEV LSEEITERDE EALKFLRDIK WSKIDDPKGF KLEFFFETNP YIKNTLLTKT YHMIDEDEPI
201: LEKAIGTEIE WYPGKCLTQK ILKKKPKKGS KNAKPITKTE QCESFFNFFS PPQVPEDEED FDEDAAEELQ NLMEQDYDVG STIRDKIIPH AVSWFTGEAA
301: EDDDYADLED DEDEDDDEEN EEDEEDEDEE DDEDEEEEED TKTKKKSAAA RKKSGRAPVG DGQSGERPPE CKQQ

Best Arabidopsis Sequence Match ( AT2G19480.2 )
(BLAST)

001: MSNDKDSMNM SDLSTALNEE DRAGLVNALK NKLQNLAGQH SDVLENLTPP VRKRVEFLRE IQNQYDEMEA KFFEERAALE AKYQKLYQPL YTKRYEIVNG
101: VVEVEGAAEE VKSEQGEDKS AEEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW SRVEEPKGFK LEFFFDQNPY FKNTVLTKTY HMIDEDEPIL
201: EKALGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPDDDEDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVE
301: ADDLDIEDDD DEIDEDDDEE DEEDDEDDEE EDDEDDDEEE EADQGKKSKK KKAGRSQLAE GQAGERPPEC KQQ

Arabidopsis Description

NAP1;2Nucleosome assembly protein 1;2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.